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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OHDY] human gut metagenome; feces
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182047735
OHDY01000892
[OHDY] human gut metagenome; feces
87
12
-
Val
TAC
[ENA]
¢þ
>WENV182047727
OHDY01000884
[OHDY] human gut metagenome; feces
103
180
+
Leu
TAG
[ENA]
¢þ
>WENV182047734
OHDY01000892
[OHDY] human gut metagenome; feces
182
98
-
Tyr
GTA
[ENA]
¢þ
>WENV182047728
OHDY01000884
[OHDY] human gut metagenome; feces
187
276
+
Tyr
GTA
[ENA]
¢þ
>WENV182047742
OHDY01001731
[OHDY] human gut metagenome; feces
224
299
+
Pro
GGG
[ENA]
¢þ
>WENV182047723
OHDY01000873
[OHDY] human gut metagenome; feces
248
332
+
Leu
TAG
[ENA]
¢þ
>WENV182047745
OHDY01002371
[OHDY] human gut metagenome; feces
264
191
-
Trp
CCA
[ENA]
¢þ
>WENV182047741
OHDY01001574
[OHDY] human gut metagenome; feces
272
346
+
Ala
GGC
[ENA]
¢þ
>WENV182047743
OHDY01002095
[OHDY] human gut metagenome; feces
282
200
-
Leu
TAG
[ENA]
¢þ
>WENV182047736
OHDY01000988
[OHDY] human gut metagenome; feces
287
370
+
Tyr
GTA
[ENA]
¢þ
>WENV182047733
OHDY01000892
[OHDY] human gut metagenome; feces
292
218
-
Glu
TTC
[ENA]
¢þ
>WENV182047738
OHDY01001082
[OHDY] human gut metagenome; feces
301
385
+
Leu
CAA
[ENA]
¢þ
>WENV182047715
OHDY01000080
[OHDY] human gut metagenome; feces
315
227
-
Leu
TAA
[ENA]
¢þ
>WENV182047744
OHDY01002176
[OHDY] human gut metagenome; feces
343
430
+
Ser
TGA
[ENA]
¢þ
>WENV182047711
OHDY01000045
[OHDY] human gut metagenome; feces
345
418
+
Gly
GCC
[ENA]
¢þ
>WENV182047721
OHDY01000373
[OHDY] human gut metagenome; feces
359
285
-
Thr
TGT
[ENA]
¢þ
>WENV182047732
OHDY01000892
[OHDY] human gut metagenome; feces
376
300
-
Ile2
CAT
[ENA]
¢þ
>WENV182047739
OHDY01001088
[OHDY] human gut metagenome; feces
378
451
+
Phe
GAA
[ENA]
¢þ
>WENV182047737
OHDY01000988
[OHDY] human gut metagenome; feces
387
459
+
Thr
GGT
[ENA]
¢þ
>WENV182047714
OHDY01000080
[OHDY] human gut metagenome; feces
408
334
-
Val
TAC
[ENA]
¢þ
>WENV182047710
OHDY01000043
[OHDY] human gut metagenome; feces
413
486
+
Lys
TTT
[ENA]
¢þ
>WENV182047722
OHDY01000407
[OHDY] human gut metagenome; feces
415
340
-
Val
TAC
[ENA]
¢þ
>WENV182047724
OHDY01000873
[OHDY] human gut metagenome; feces
431
502
+
Glu
TTC
[ENA]
¢þ
>WENV182047712
OHDY01000045
[OHDY] human gut metagenome; feces
434
519
+
Leu
TAA
[ENA]
¢þ
>WENV182047720
OHDY01000373
[OHDY] human gut metagenome; feces
464
388
-
Leu
TAA
[ENA]
¢þ
>WENV182047731
OHDY01000892
[OHDY] human gut metagenome; feces
466
390
-
Arg
TCT
[ENA]
¢þ
>WENV182047713
OHDY01000080
[OHDY] human gut metagenome; feces
488
413
-
Asp
GTC
[ENA]
¢þ
>WENV182047725
OHDY01000873
[OHDY] human gut metagenome; feces
507
579
+
Thr
TGT
[ENA]
¢þ
>WENV182047730
OHDY01000892
[OHDY] human gut metagenome; feces
583
513
-
Gly
TCC
[ENA]
¢þ
>WENV182047726
OHDY01000873
[OHDY] human gut metagenome; feces
583
666
+
Tyr
GTA
[ENA]
¢þ
>WENV182047740
OHDY01001137
[OHDY] human gut metagenome; feces
611
528
-
Tyr
GTA
[ENA]
¢þ
>WENV182047729
OHDY01000892
[OHDY] human gut metagenome; feces
677
602
-
Pro
TGG
[ENA]
¢þ
>WENV182047717
OHDY01000336
[OHDY] human gut metagenome; feces
694
623
-
Gln
TTG
[ENA]
¢þ
>WENV182047716
OHDY01000251
[OHDY] human gut metagenome; feces
754
828
+
Ile2
CAT
[ENA]
¢þ
>WENV182047719
OHDY01000373
[OHDY] human gut metagenome; feces
757
682
-
Phe
GAA
[ENA]
¢þ
>WENV182047718
OHDY01000373
[OHDY] human gut metagenome; feces
836
761
-
Ile
TAT
[ENA]
¢þ
>WENV182047709
OHDY01000019
[OHDY] human gut metagenome; feces
2171
2097
-
Ala
TGC
[ENA]
¢þ
>WENV182047708
OHDY01000019
[OHDY] human gut metagenome; feces
2262
2188
-
Ile
GAT
[ENA]
¢þ
>WENV182047707
OHDY01000016
[OHDY] human gut metagenome; feces
3519
3445
-
Thr
TGT
[ENA]
¢þ
>WENV182047706
OHDY01000014
[OHDY] human gut metagenome; feces
3655
3581
-
Asp
GTC
[ENA]
¢þ
>WENV182047705
OHDY01000002
[OHDY] human gut metagenome; feces
8635
8553
-
Tyr
GTA
[ENA]
¢þ
>WENV182047704
OHDY01000002
[OHDY] human gut metagenome; feces
8870
8798
-
Glu
TTC
[ENA]
¢þ
>WENV182047703
OHDY01000002
[OHDY] human gut metagenome; feces
8946
8875
-
Gln
TTG
[ENA]
¢þ
>WENV182047702
OHDY01000002
[OHDY] human gut metagenome; feces
9024
8951
-
Trp
CCA
[ENA]
¢þ
>WENV182047701
OHDY01000002
[OHDY] human gut metagenome; feces
9104
9031
-
Asn
GTT
[ENA]
¢þ
>WENV182047700
OHDY01000002
[OHDY] human gut metagenome; feces
9394
9321
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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