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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OHEY] human gut metagenome; feces
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182064089
OHEY01000424
[OHEY] human gut metagenome; feces
9
84
+
Gly
GCC
[ENA]
¢þ
>WENV182064083
OHEY01000127
[OHEY] human gut metagenome; feces
40
115
+
Pro
TGG
[ENA]
¢þ
>WENV182064111
OHEY01002184
[OHEY] human gut metagenome; feces
76
151
+
Phe
GAA
[ENA]
¢þ
>WENV182064088
OHEY01000369
[OHEY] human gut metagenome; feces
96
171
+
Phe
GAA
[ENA]
¢þ
>WENV182064103
OHEY01001703
[OHEY] human gut metagenome; feces
117
42
-
Thr
TGT
[ENA]
¢þ
>WENV182064121
OHEY01003605
[OHEY] human gut metagenome; feces
121
197
+
Asn
GTT
[ENA]
¢þ
>WENV182064119
OHEY01002783
[OHEY] human gut metagenome; feces
136
60
-
Arg
TCT
[ENA]
¢þ
>WENV182064090
OHEY01000424
[OHEY] human gut metagenome; feces
139
212
+
Cys
GCA
[ENA]
¢þ
>WENV182064125
OHEY01004633
[OHEY] human gut metagenome; feces
162
89
-
Trp
CCA
[ENA]
¢þ
>WENV182064082
OHEY01000103
[OHEY] human gut metagenome; feces
192
117
-
Arg
ACG
[ENA]
¢þ
>WENV182064091
OHEY01000424
[OHEY] human gut metagenome; feces
225
311
+
Leu
TAA
[ENA]
¢þ
>WENV182064124
OHEY01004603
[OHEY] human gut metagenome; feces
260
167
-
Ser
GCT
[ENA]
¢þ
>WENV182064128
OHEY01005332
[OHEY] human gut metagenome; feces
268
344
+
Met
CAT
[ENA]
¢þ
>WENV182064127
OHEY01004871
[OHEY] human gut metagenome; feces
307
232
-
Asn
GTT
[ENA]
¢þ
>WENV182064118
OHEY01002783
[OHEY] human gut metagenome; feces
309
234
-
Ile2
CAT
[ENA]
¢þ
>WENV182064112
OHEY01002184
[OHEY] human gut metagenome; feces
318
393
+
Gly
GCC
[ENA]
¢þ
>WENV182064092
OHEY01000426
[OHEY] human gut metagenome; feces
319
233
-
Leu
GAG
[ENA]
¢þ
>WENV182064081
OHEY01000103
[OHEY] human gut metagenome; feces
329
244
-
Leu
TAA
[ENA]
¢þ
>WENV182064130
OHEY01005558
[OHEY] human gut metagenome; feces
351
426
+
Val
GAC
[ENA]
¢þ
>WENV182064122
OHEY01003675
[OHEY] human gut metagenome; feces
352
258
-
SeC
TCA
[ENA]
¢þ
>WENV182064126
OHEY01004756
[OHEY] human gut metagenome; feces
352
268
-
Leu
CAA
[ENA]
¢þ
>WENV182064096
OHEY01000589
[OHEY] human gut metagenome; feces
369
445
+
Met
CAT
[ENA]
¢þ
>WENV182064123
OHEY01004603
[OHEY] human gut metagenome; feces
380
293
-
Ser
TGA
[ENA]
¢þ
>WENV182064102
OHEY01001642
[OHEY] human gut metagenome; feces
434
359
-
Phe
GAA
[ENA]
¢þ
>WENV182064129
OHEY01005332
[OHEY] human gut metagenome; feces
436
507
+
Glu
TTC
[ENA]
¢þ
>WENV182064101
OHEY01001473
[OHEY] human gut metagenome; feces
464
388
-
Ile
GAT
[ENA]
¢þ
>WENV182064115
OHEY01002652
[OHEY] human gut metagenome; feces
486
558
+
Pro
TGG
[ENA]
¢þ
>WENV182064105
OHEY01001814
[OHEY] human gut metagenome; feces
486
560
+
Thr
TGT
[ENA]
¢þ
>WENV182064097
OHEY01000589
[OHEY] human gut metagenome; feces
493
567
+
Gln
CTG
[ENA]
¢þ
>WENV182064104
OHEY01001794
[OHEY] human gut metagenome; feces
496
572
+
fMet
CAT
[ENA]
¢þ
>WENV182064113
OHEY01002184
[OHEY] human gut metagenome; feces
498
570
+
Thr
TGT
[ENA]
¢þ
>WENV182064100
OHEY01001473
[OHEY] human gut metagenome; feces
543
468
-
Ala
TGC
[ENA]
¢þ
>WENV182064116
OHEY01002652
[OHEY] human gut metagenome; feces
566
636
+
Gly
TCC
[ENA]
¢þ
>WENV182064108
OHEY01002064
[OHEY] human gut metagenome; feces
572
648
+
Asp
GTC
[ENA]
¢þ
>WENV182064106
OHEY01001814
[OHEY] human gut metagenome; feces
603
686
+
Tyr
GTA
[ENA]
¢þ
>WENV182064117
OHEY01002652
[OHEY] human gut metagenome; feces
640
713
+
Gly
GCC
[ENA]
¢þ
>WENV182064109
OHEY01002064
[OHEY] human gut metagenome; feces
657
732
+
Trp
CCA
[ENA]
¢þ
>WENV182064093
OHEY01000477
[OHEY] human gut metagenome; feces
661
574
-
Ser
GGA
[ENA]
¢þ
>WENV182064120
OHEY01003273
[OHEY] human gut metagenome; feces
672
586
-
Leu
CAG
[ENA]
¢þ
>WENV182064099
OHEY01000792
[OHEY] human gut metagenome; feces
688
615
-
Gly
GCC
[ENA]
¢þ
>WENV182064110
OHEY01002178
[OHEY] human gut metagenome; feces
744
816
+
Arg
CCT
[ENA]
¢þ
>WENV182064107
OHEY01001814
[OHEY] human gut metagenome; feces
777
849
+
Thr
GGT
[ENA]
¢þ
>WENV182064080
OHEY01000102
[OHEY] human gut metagenome; feces
807
731
-
Ile
GAT
[ENA]
¢þ
>WENV182064114
OHEY01002268
[OHEY] human gut metagenome; feces
818
902
+
Leu
TAG
[ENA]
¢þ
>WENV182064098
OHEY01000701
[OHEY] human gut metagenome; feces
920
844
-
Pro
CGG
[ENA]
¢þ
>WENV182064094
OHEY01000509
[OHEY] human gut metagenome; feces
1283
1358
+
Val
TAC
[ENA]
¢þ
>WENV182064095
OHEY01000509
[OHEY] human gut metagenome; feces
1363
1438
+
Lys
TTT
[ENA]
¢þ
>WENV182064084
OHEY01000309
[OHEY] human gut metagenome; feces
1526
1450
-
Pro
GGG
[ENA]
¢þ
>WENV182064085
OHEY01000316
[OHEY] human gut metagenome; feces
1541
1457
-
Tyr
GTA
[ENA]
¢þ
>WENV182064087
OHEY01000343
[OHEY] human gut metagenome; feces
1762
1687
-
Thr
GGT
[ENA]
¢þ
>WENV182064086
OHEY01000343
[OHEY] human gut metagenome; feces
1955
1882
-
Ile2
CAT
[ENA]
¢þ
>WENV182064074
OHEY01000010
[OHEY] human gut metagenome; feces
2200
2125
-
Ala
TGC
[ENA]
¢þ
>WENV182064077
OHEY01000083
[OHEY] human gut metagenome; feces
2225
2301
+
Arg
CCG
[ENA]
¢þ
>WENV182064073
OHEY01000010
[OHEY] human gut metagenome; feces
2319
2243
-
Ile
GAT
[ENA]
¢þ
>WENV182064078
OHEY01000083
[OHEY] human gut metagenome; feces
2360
2435
+
His
GTG
[ENA]
¢þ
>WENV182064079
OHEY01000083
[OHEY] human gut metagenome; feces
2456
2542
+
Leu
CAG
[ENA]
¢þ
>WENV182064075
OHEY01000019
[OHEY] human gut metagenome; feces
2603
2677
+
Ile
GAT
[ENA]
¢þ
>WENV182064076
OHEY01000019
[OHEY] human gut metagenome; feces
2694
2768
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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