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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHFF] human gut metagenome; feces
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182068179
OHFF01000047
[OHFF] human gut metagenome; feces
45
120
+
Lys
CTT
[ENA]
¢þ
>WENV182068180
OHFF01000047
[OHFF] human gut metagenome; feces
122
196
+
Glu
CTC
[ENA]
¢þ
>WENV182068187
OHFF01000336
[OHFF] human gut metagenome; feces
259
184
-
Pro
CGG
[ENA]
¢þ
>WENV182068181
OHFF01000047
[OHFF] human gut metagenome; feces
389
464
+
Ala
TGC
[ENA]
¢þ
>WENV182068182
OHFF01000047
[OHFF] human gut metagenome; feces
550
626
+
Asp
GTC
[ENA]
¢þ
>WENV182068186
OHFF01000209
[OHFF] human gut metagenome; feces
553
481
-
Arg
CCT
[ENA]
¢þ
>WENV182068183
OHFF01000047
[OHFF] human gut metagenome; feces
730
805
+
Thr
TGT
[ENA]
¢þ
>WENV182068184
OHFF01000047
[OHFF] human gut metagenome; feces
828
913
+
Tyr
GTA
[ENA]
¢þ
>WENV182068185
OHFF01000047
[OHFF] human gut metagenome; feces
974
1049
+
Ala
GGC
[ENA]
¢þ
>WENV182068178
OHFF01000004
[OHFF] human gut metagenome; feces
3319
3245
-
Ala
TGC
[ENA]
¢þ
>WENV182068177
OHFF01000004
[OHFF] human gut metagenome; feces
3424
3348
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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