This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OHFS] human gut metagenome; feces
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182075979
OHFS01000162
[OHFS] human gut metagenome; feces
11
100
+
Leu
GAG
[ENA]
¢þ
>WENV182075991
OHFS01000683
[OHFS] human gut metagenome; feces
22
98
+
fMet
CAT
[ENA]
¢þ
>WENV182076006
OHFS01001670
[OHFS] human gut metagenome; feces
78
152
+
Val
CAC
[ENA]
¢þ
>WENV182076007
OHFS01001718
[OHFS] human gut metagenome; feces
87
15
-
Asn
GTT
[ENA]
¢þ
>WENV182075971
OHFS01000070
[OHFS] human gut metagenome; feces
179
253
+
Ile
GAT
[ENA]
¢þ
>WENV182075998
OHFS01000839
[OHFS] human gut metagenome; feces
181
96
-
Ser
TGA
[ENA]
¢þ
>WENV182076000
OHFS01001136
[OHFS] human gut metagenome; feces
202
284
+
Tyr
GTA
[ENA]
¢þ
>WENV182075990
OHFS01000633
[OHFS] human gut metagenome; feces
210
284
+
Arg
CCG
[ENA]
¢þ
>WENV182075984
OHFS01000418
[OHFS] human gut metagenome; feces
251
178
-
Gly
TCC
[ENA]
¢þ
>WENV182076005
OHFS01001562
[OHFS] human gut metagenome; feces
267
191
-
Ile
GAT
[ENA]
¢þ
>WENV182075972
OHFS01000070
[OHFS] human gut metagenome; feces
270
344
+
Ala
TGC
[ENA]
¢þ
>WENV182076002
OHFS01001232
[OHFS] human gut metagenome; feces
290
205
-
Ser
GGA
[ENA]
¢þ
>WENV182075997
OHFS01000793
[OHFS] human gut metagenome; feces
350
268
-
Tyr
GTA
[ENA]
¢þ
>WENV182076001
OHFS01001136
[OHFS] human gut metagenome; feces
362
436
+
Met
CAT
[ENA]
¢þ
>WENV182075975
OHFS01000083
[OHFS] human gut metagenome; feces
365
291
-
Asp
GTC
[ENA]
¢þ
>WENV182076004
OHFS01001562
[OHFS] human gut metagenome; feces
376
301
-
Ala
TGC
[ENA]
¢þ
>WENV182075989
OHFS01000600
[OHFS] human gut metagenome; feces
398
474
+
Arg
TCT
[ENA]
¢þ
>WENV182075981
OHFS01000223
[OHFS] human gut metagenome; feces
436
509
+
Lys
TTT
[ENA]
¢þ
>WENV182075992
OHFS01000770
[OHFS] human gut metagenome; feces
465
540
+
Trp
CCA
[ENA]
¢þ
>WENV182075988
OHFS01000572
[OHFS] human gut metagenome; feces
584
658
+
Lys
CTT
[ENA]
¢þ
>WENV182075996
OHFS01000793
[OHFS] human gut metagenome; feces
586
514
-
Glu
TTC
[ENA]
¢þ
>WENV182076003
OHFS01001383
[OHFS] human gut metagenome; feces
598
522
-
fMet
CAT
[ENA]
¢þ
>WENV182075993
OHFS01000775
[OHFS] human gut metagenome; feces
615
704
+
Ser
GCT
[ENA]
¢þ
>WENV182075970
OHFS01000041
[OHFS] human gut metagenome; feces
628
554
-
Gln
CTG
[ENA]
¢þ
>WENV182075995
OHFS01000793
[OHFS] human gut metagenome; feces
662
591
-
Gln
TTG
[ENA]
¢þ
>WENV182075969
OHFS01000041
[OHFS] human gut metagenome; feces
739
666
-
Glu
CTC
[ENA]
¢þ
>WENV182075994
OHFS01000793
[OHFS] human gut metagenome; feces
740
667
-
Trp
CCA
[ENA]
¢þ
>WENV182075999
OHFS01000921
[OHFS] human gut metagenome; feces
747
821
+
Ile
TAT
[ENA]
¢þ
>WENV182075987
OHFS01000557
[OHFS] human gut metagenome; feces
785
859
+
Asp
GTC
[ENA]
¢þ
>WENV182075966
OHFS01000005
[OHFS] human gut metagenome; feces
846
920
+
Thr
TGT
[ENA]
¢þ
>WENV182075986
OHFS01000511
[OHFS] human gut metagenome; feces
873
946
+
Asn
GTT
[ENA]
¢þ
>WENV182075985
OHFS01000458
[OHFS] human gut metagenome; feces
879
959
+
Leu
TAA
[ENA]
¢þ
>WENV182075968
OHFS01000026
[OHFS] human gut metagenome; feces
1004
923
-
Leu
TAG
[ENA]
¢þ
>WENV182075982
OHFS01000364
[OHFS] human gut metagenome; feces
1023
940
-
Leu
CAG
[ENA]
¢þ
>WENV182075983
OHFS01000415
[OHFS] human gut metagenome; feces
1133
1059
-
Pro
CGG
[ENA]
¢þ
>WENV182075967
OHFS01000026
[OHFS] human gut metagenome; feces
1172
1097
-
Thr
CGT
[ENA]
¢þ
>WENV182075977
OHFS01000135
[OHFS] human gut metagenome; feces
1739
1824
+
Ser
CGA
[ENA]
¢þ
>WENV182075976
OHFS01000121
[OHFS] human gut metagenome; feces
1872
1796
-
Pro
GGG
[ENA]
¢þ
>WENV182075980
OHFS01000175
[OHFS] human gut metagenome; feces
1880
1954
+
Leu
CAA
[ENA]
¢þ
>WENV182075978
OHFS01000157
[OHFS] human gut metagenome; feces
1996
2070
+
Ile
GAT
[ENA]
¢þ
>WENV182075973
OHFS01000076
[OHFS] human gut metagenome; feces
2681
2608
-
Gly
CCC
[ENA]
¢þ
>WENV182075974
OHFS01000083
[OHFS] human gut metagenome; feces
2701
2773
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK