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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHFT] human gut metagenome; feces
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182076023
OHFT01000738
[OHFT] human gut metagenome; feces
11
87
+
Ile
GAT
[ENA]
¢þ
>WENV182076033
OHFT01001331
[OHFT] human gut metagenome; feces
16
89
+
Cys
GCA
[ENA]
¢þ
>WENV182076034
OHFT01001331
[OHFT] human gut metagenome; feces
103
189
+
Leu
TAA
[ENA]
¢þ
>WENV182076024
OHFT01000738
[OHFT] human gut metagenome; feces
108
183
+
Ala
TGC
[ENA]
¢þ
>WENV182076032
OHFT01001142
[OHFT] human gut metagenome; feces
142
70
-
Asn
GTT
[ENA]
¢þ
>WENV182076026
OHFT01000970
[OHFT] human gut metagenome; feces
156
242
+
Leu
CAG
[ENA]
¢þ
>WENV182076025
OHFT01000738
[OHFT] human gut metagenome; feces
203
279
+
Ile
GAT
[ENA]
¢þ
>WENV182076030
OHFT01000994
[OHFT] human gut metagenome; feces
224
296
+
Thr
TGT
[ENA]
¢þ
>WENV182076020
OHFT01000351
[OHFT] human gut metagenome; feces
283
354
+
Gln
TTG
[ENA]
¢þ
>WENV182076036
OHFT01001720
[OHFT] human gut metagenome; feces
285
360
+
Ile2
CAT
[ENA]
¢þ
>WENV182076035
OHFT01001594
[OHFT] human gut metagenome; feces
309
396
+
Ser
GGA
[ENA]
¢þ
>WENV182076028
OHFT01000983
[OHFT] human gut metagenome; feces
319
394
+
Thr
TGT
[ENA]
¢þ
>WENV182076017
OHFT01000146
[OHFT] human gut metagenome; feces
351
276
-
Ile
GAT
[ENA]
¢þ
>WENV182076018
OHFT01000199
[OHFT] human gut metagenome; feces
361
436
+
Trp
CCA
[ENA]
¢þ
>WENV182076029
OHFT01000983
[OHFT] human gut metagenome; feces
405
489
+
Tyr
GTA
[ENA]
¢þ
>WENV182076021
OHFT01000406
[OHFT] human gut metagenome; feces
425
499
+
Thr
TGT
[ENA]
¢þ
>WENV182076031
OHFT01000994
[OHFT] human gut metagenome; feces
481
567
+
Leu
TAA
[ENA]
¢þ
>WENV182076022
OHFT01000406
[OHFT] human gut metagenome; feces
542
625
+
Tyr
GTA
[ENA]
¢þ
>WENV182076027
OHFT01000980
[OHFT] human gut metagenome; feces
569
493
-
fMet
CAT
[ENA]
¢þ
>WENV182076016
OHFT01000140
[OHFT] human gut metagenome; feces
586
661
+
Phe
GAA
[ENA]
¢þ
>WENV182076019
OHFT01000210
[OHFT] human gut metagenome; feces
671
578
-
Ser
CGA
[ENA]
¢þ
>WENV182076014
OHFT01000098
[OHFT] human gut metagenome; feces
1047
1122
+
Lys
CTT
[ENA]
¢þ
>WENV182076013
OHFT01000096
[OHFT] human gut metagenome; feces
1071
986
-
Leu
TAA
[ENA]
¢þ
>WENV182076015
OHFT01000098
[OHFT] human gut metagenome; feces
1124
1198
+
Glu
CTC
[ENA]
¢þ
>WENV182076012
OHFT01000096
[OHFT] human gut metagenome; feces
1160
1087
-
Gly
GCC
[ENA]
¢þ
>WENV182076011
OHFT01000013
[OHFT] human gut metagenome; feces
2184
2109
-
Ala
TGC
[ENA]
¢þ
>WENV182076010
OHFT01000013
[OHFT] human gut metagenome; feces
2297
2221
-
Ile
GAT
[ENA]
¢þ
>WENV182076009
OHFT01000004
[OHFT] human gut metagenome; feces
4619
4545
-
Ala
TGC
[ENA]
¢þ
>WENV182076008
OHFT01000004
[OHFT] human gut metagenome; feces
4710
4636
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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