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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHGD] human gut metagenome; feces
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182078938
OHGD01001303
[OHGD] human gut metagenome; feces
69
141
+
Glu
TTC
[ENA]
¢þ
>WENV182078945
OHGD01002174
[OHGD] human gut metagenome; feces
92
20
-
Arg
CCT
[ENA]
¢þ
>WENV182078954
OHGD01003630
[OHGD] human gut metagenome; feces
135
63
-
Cys
GCA
[ENA]
¢þ
>WENV182078941
OHGD01001626
[OHGD] human gut metagenome; feces
172
255
+
Leu
GAG
[ENA]
¢þ
>WENV182078956
OHGD01003897
[OHGD] human gut metagenome; feces
197
125
-
Thr
GGT
[ENA]
¢þ
>WENV182078952
OHGD01003481
[OHGD] human gut metagenome; feces
210
136
-
Thr
TGT
[ENA]
¢þ
>WENV182078957
OHGD01004059
[OHGD] human gut metagenome; feces
212
286
+
fMet
CAT
[ENA]
¢þ
>WENV182078950
OHGD01002756
[OHGD] human gut metagenome; feces
239
313
+
Glu
CTC
[ENA]
¢þ
>WENV182078953
OHGD01003583
[OHGD] human gut metagenome; feces
270
352
+
Leu
TAG
[ENA]
¢þ
>WENV182078958
OHGD01004059
[OHGD] human gut metagenome; feces
291
365
+
Phe
GAA
[ENA]
¢þ
>WENV182078923
OHGD01000024
[OHGD] human gut metagenome; feces
294
368
+
Ile
GAT
[ENA]
¢þ
>WENV182078955
OHGD01003897
[OHGD] human gut metagenome; feces
297
214
-
Tyr
GTA
[ENA]
¢þ
>WENV182078929
OHGD01000618
[OHGD] human gut metagenome; feces
306
380
+
Asp
GTC
[ENA]
¢þ
>WENV182078948
OHGD01002406
[OHGD] human gut metagenome; feces
344
269
-
Val
GAC
[ENA]
¢þ
>WENV182078939
OHGD01001480
[OHGD] human gut metagenome; feces
344
417
+
Trp
CCA
[ENA]
¢þ
>WENV182078951
OHGD01002756
[OHGD] human gut metagenome; feces
355
431
+
Asn
GTT
[ENA]
¢þ
>WENV182078933
OHGD01001152
[OHGD] human gut metagenome; feces
370
445
+
Phe
GAA
[ENA]
¢þ
>WENV182078942
OHGD01001916
[OHGD] human gut metagenome; feces
371
287
-
Leu
CAA
[ENA]
¢þ
>WENV182078959
OHGD01004059
[OHGD] human gut metagenome; feces
387
458
+
Gly
TCC
[ENA]
¢þ
>WENV182078943
OHGD01001964
[OHGD] human gut metagenome; feces
403
477
+
Ala
GGC
[ENA]
¢þ
>WENV182078946
OHGD01002194
[OHGD] human gut metagenome; feces
430
355
-
Gly
CCC
[ENA]
¢þ
>WENV182078924
OHGD01000024
[OHGD] human gut metagenome; feces
458
532
+
Ala
TGC
[ENA]
¢þ
>WENV182078934
OHGD01001152
[OHGD] human gut metagenome; feces
476
551
+
Gly
GCC
[ENA]
¢þ
>WENV182078944
OHGD01002119
[OHGD] human gut metagenome; feces
505
429
-
Ile2
CAT
[ENA]
¢þ
>WENV182078949
OHGD01002454
[OHGD] human gut metagenome; feces
514
602
+
Ser
GGA
[ENA]
¢þ
>WENV182078935
OHGD01001152
[OHGD] human gut metagenome; feces
558
633
+
Val
TAC
[ENA]
¢þ
>WENV182078947
OHGD01002208
[OHGD] human gut metagenome; feces
560
634
+
Pro
GGG
[ENA]
¢þ
>WENV182078940
OHGD01001516
[OHGD] human gut metagenome; feces
575
648
+
Lys
TTT
[ENA]
¢þ
>WENV182078931
OHGD01001084
[OHGD] human gut metagenome; feces
581
505
-
His
GTG
[ENA]
¢þ
>WENV182078936
OHGD01001152
[OHGD] human gut metagenome; feces
637
713
+
Asp
GTC
[ENA]
¢þ
>WENV182078930
OHGD01001084
[OHGD] human gut metagenome; feces
664
588
-
Arg
ACG
[ENA]
¢þ
>WENV182078937
OHGD01001152
[OHGD] human gut metagenome; feces
717
792
+
Thr
GGT
[ENA]
¢þ
>WENV182078932
OHGD01001102
[OHGD] human gut metagenome; feces
804
733
-
Gln
TTG
[ENA]
¢þ
>WENV182078927
OHGD01000276
[OHGD] human gut metagenome; feces
1077
1151
+
His
GTG
[ENA]
¢þ
>WENV182078925
OHGD01000078
[OHGD] human gut metagenome; feces
1120
1195
+
Lys
CTT
[ENA]
¢þ
>WENV182078928
OHGD01000276
[OHGD] human gut metagenome; feces
1159
1232
+
Gln
TTG
[ENA]
¢þ
>WENV182078926
OHGD01000138
[OHGD] human gut metagenome; feces
1333
1408
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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