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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHGM] human gut metagenome; feces
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182082835
OHGM01001002
[OHGM] human gut metagenome; feces
91
167
+
Pro
TGG
[ENA]
¢þ
>WENV182082834
OHGM01000705
[OHGM] human gut metagenome; feces
102
27
-
Ile2
CAT
[ENA]
¢þ
>WENV182082821
OHGM01000044
[OHGM] human gut metagenome; feces
129
53
-
Arg
CCG
[ENA]
¢þ
>WENV182082826
OHGM01000454
[OHGM] human gut metagenome; feces
137
62
-
Trp
CCA
[ENA]
¢þ
>WENV182082830
OHGM01000555
[OHGM] human gut metagenome; feces
228
302
+
Asp
GTC
[ENA]
¢þ
>WENV182082831
OHGM01000555
[OHGM] human gut metagenome; feces
311
386
+
Phe
GAA
[ENA]
¢þ
>WENV182082824
OHGM01000434
[OHGM] human gut metagenome; feces
365
439
+
Glu
CTC
[ENA]
¢þ
>WENV182082825
OHGM01000434
[OHGM] human gut metagenome; feces
443
518
+
Lys
CTT
[ENA]
¢þ
>WENV182082829
OHGM01000489
[OHGM] human gut metagenome; feces
509
433
-
Ala
GGC
[ENA]
¢þ
>WENV182082832
OHGM01000555
[OHGM] human gut metagenome; feces
553
628
+
Gly
GCC
[ENA]
¢þ
>WENV182082828
OHGM01000489
[OHGM] human gut metagenome; feces
592
517
-
Ile
GAT
[ENA]
¢þ
>WENV182082833
OHGM01000555
[OHGM] human gut metagenome; feces
658
732
+
Cys
GCA
[ENA]
¢þ
>WENV182082827
OHGM01000473
[OHGM] human gut metagenome; feces
682
598
-
Tyr
GTA
[ENA]
¢þ
>WENV182082823
OHGM01000402
[OHGM] human gut metagenome; feces
799
724
-
Ile2
CAT
[ENA]
¢þ
>WENV182082822
OHGM01000049
[OHGM] human gut metagenome; feces
941
1013
+
Gln
TTG
[ENA]
¢þ
>WENV182082818
OHGM01000005
[OHGM] human gut metagenome; feces
1393
1465
+
Met
CAT
[ENA]
¢þ
>WENV182082819
OHGM01000020
[OHGM] human gut metagenome; feces
1774
1848
+
Ile
GAT
[ENA]
¢þ
>WENV182082820
OHGM01000020
[OHGM] human gut metagenome; feces
1865
1939
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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