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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OHGV] human gut metagenome; feces
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182086987
OHGV01000120
[OHGV] human gut metagenome; feces
88
159
+
Gln
TTG
[ENA]
¢þ
>WENV182086999
OHGV01000839
[OHGV] human gut metagenome; feces
100
29
-
Gly
GCC
[ENA]
¢þ
>WENV182087000
OHGV01000966
[OHGV] human gut metagenome; feces
141
68
-
Phe
GAA
[ENA]
¢þ
>WENV182087001
OHGV01001123
[OHGV] human gut metagenome; feces
169
243
+
Ile2
CAT
[ENA]
¢þ
>WENV182086998
OHGV01000839
[OHGV] human gut metagenome; feces
181
108
-
Phe
GAA
[ENA]
¢þ
>WENV182086992
OHGV01000664
[OHGV] human gut metagenome; feces
225
299
+
Ala
GGC
[ENA]
¢þ
>WENV182086997
OHGV01000839
[OHGV] human gut metagenome; feces
260
187
-
fMet
CAT
[ENA]
¢þ
>WENV182087002
OHGV01002045
[OHGV] human gut metagenome; feces
271
354
+
Tyr
GTA
[ENA]
¢þ
>WENV182086988
OHGV01000120
[OHGV] human gut metagenome; feces
279
352
+
Thr
TGT
[ENA]
¢þ
>WENV182086996
OHGV01000839
[OHGV] human gut metagenome; feces
350
278
-
Thr
TGT
[ENA]
¢þ
>WENV182086990
OHGV01000410
[OHGV] human gut metagenome; feces
437
363
-
Asp
GTC
[ENA]
¢þ
>WENV182086995
OHGV01000839
[OHGV] human gut metagenome; feces
452
378
-
Val
TAC
[ENA]
¢þ
>WENV182086994
OHGV01000839
[OHGV] human gut metagenome; feces
564
490
-
Asp
GTC
[ENA]
¢þ
>WENV182086991
OHGV01000607
[OHGV] human gut metagenome; feces
613
540
-
Lys
TTT
[ENA]
¢þ
>WENV182086993
OHGV01000839
[OHGV] human gut metagenome; feces
650
576
-
Ile2
CAT
[ENA]
¢þ
>WENV182086989
OHGV01000120
[OHGV] human gut metagenome; feces
1091
1178
+
Leu
TAA
[ENA]
¢þ
>WENV182086986
OHGV01000034
[OHGV] human gut metagenome; feces
2338
2412
+
Ile
GAT
[ENA]
¢þ
>WENV182086985
OHGV01000028
[OHGV] human gut metagenome; feces
2771
2697
-
Ala
TGC
[ENA]
¢þ
>WENV182086984
OHGV01000028
[OHGV] human gut metagenome; feces
2876
2800
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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