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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHHX] human gut metagenome; feces
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182102773
OHHX01000376
[OHHX] human gut metagenome; feces
177
101
-
Arg
TCT
[ENA]
¢þ
>WENV182102782
OHHX01001553
[OHHX] human gut metagenome; feces
230
305
+
Asn
GTT
[ENA]
¢þ
>WENV182102772
OHHX01000376
[OHHX] human gut metagenome; feces
257
183
-
Asn
GTT
[ENA]
¢þ
>WENV182102775
OHHX01000790
[OHHX] human gut metagenome; feces
301
228
-
Gly
TCC
[ENA]
¢þ
>WENV182102783
OHHX01001639
[OHHX] human gut metagenome; feces
306
380
+
Asp
GTC
[ENA]
¢þ
>WENV182102774
OHHX01000556
[OHHX] human gut metagenome; feces
346
270
-
Ile
GAT
[ENA]
¢þ
>WENV182102770
OHHX01000251
[OHHX] human gut metagenome; feces
367
442
+
Gly
GCC
[ENA]
¢þ
>WENV182102777
OHHX01001033
[OHHX] human gut metagenome; feces
410
483
+
Asn
GTT
[ENA]
¢þ
>WENV182102771
OHHX01000345
[OHHX] human gut metagenome; feces
416
501
+
Ser
TGA
[ENA]
¢þ
>WENV182102763
OHHX01000022
[OHHX] human gut metagenome; feces
418
492
+
Ile
GAT
[ENA]
¢þ
>WENV182102781
OHHX01001098
[OHHX] human gut metagenome; feces
424
351
-
Gly
GCC
[ENA]
¢þ
>WENV182102784
OHHX01001695
[OHHX] human gut metagenome; feces
430
358
-
Arg
CCT
[ENA]
¢þ
>WENV182102776
OHHX01000977
[OHHX] human gut metagenome; feces
455
531
+
fMet
CAT
[ENA]
¢þ
>WENV182102779
OHHX01001045
[OHHX] human gut metagenome; feces
474
390
-
Leu
CAA
[ENA]
¢þ
>WENV182102778
OHHX01001033
[OHHX] human gut metagenome; feces
497
568
+
Glu
TTC
[ENA]
¢þ
>WENV182102764
OHHX01000022
[OHHX] human gut metagenome; feces
509
583
+
Ala
TGC
[ENA]
¢þ
>WENV182102785
OHHX01001768
[OHHX] human gut metagenome; feces
510
434
-
Asp
GTC
[ENA]
¢þ
>WENV182102780
OHHX01001098
[OHHX] human gut metagenome; feces
521
437
-
Leu
CAG
[ENA]
¢þ
>WENV182102768
OHHX01000202
[OHHX] human gut metagenome; feces
613
689
+
Met
CAT
[ENA]
¢þ
>WENV182102769
OHHX01000202
[OHHX] human gut metagenome; feces
737
811
+
Gln
CTG
[ENA]
¢þ
>WENV182102767
OHHX01000124
[OHHX] human gut metagenome; feces
1050
974
-
Asp
GTC
[ENA]
¢þ
>WENV182102766
OHHX01000043
[OHHX] human gut metagenome; feces
1409
1485
+
Ile
GAT
[ENA]
¢þ
>WENV182102765
OHHX01000030
[OHHX] human gut metagenome; feces
1901
1827
-
Asn
GTT
[ENA]
¢þ
>WENV182102762
OHHX01000012
[OHHX] human gut metagenome; feces
3483
3408
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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