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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OHIF] human gut metagenome; feces
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182105815
OHIF01001534
[OHIF] human gut metagenome; feces
28
104
+
Ile
GAT
[ENA]
¢þ
>WENV182105814
OHIF01001360
[OHIF] human gut metagenome; feces
77
151
+
Ala
TGC
[ENA]
¢þ
>WENV182105812
OHIF01001066
[OHIF] human gut metagenome; feces
87
13
-
Ala
CGC
[ENA]
¢þ
>WENV182105808
OHIF01000162
[OHIF] human gut metagenome; feces
107
19
-
Ser
GGA
[ENA]
¢þ
>WENV182105818
OHIF01001562
[OHIF] human gut metagenome; feces
121
45
-
Ile
GAT
[ENA]
¢þ
>WENV182105816
OHIF01001534
[OHIF] human gut metagenome; feces
133
207
+
Ala
TGC
[ENA]
¢þ
>WENV182105819
OHIF01001654
[OHIF] human gut metagenome; feces
152
76
-
fMet
CAT
[ENA]
¢þ
>WENV182105813
OHIF01001170
[OHIF] human gut metagenome; feces
182
255
+
Gln
TTG
[ENA]
¢þ
>WENV182105817
OHIF01001562
[OHIF] human gut metagenome; feces
200
125
-
Ala
TGC
[ENA]
¢þ
>WENV182105824
OHIF01002827
[OHIF] human gut metagenome; feces
307
231
-
Asn
GTT
[ENA]
¢þ
>WENV182105820
OHIF01001705
[OHIF] human gut metagenome; feces
321
394
+
Gln
CTG
[ENA]
¢þ
>WENV182105825
OHIF01003710
[OHIF] human gut metagenome; feces
397
322
-
Ala
GGC
[ENA]
¢þ
>WENV182105823
OHIF01002827
[OHIF] human gut metagenome; feces
423
349
-
Glu
CTC
[ENA]
¢þ
>WENV182105821
OHIF01001705
[OHIF] human gut metagenome; feces
429
504
+
Pro
CGG
[ENA]
¢þ
>WENV182105811
OHIF01000781
[OHIF] human gut metagenome; feces
776
701
-
Gly
CCC
[ENA]
¢þ
>WENV182105822
OHIF01001796
[OHIF] human gut metagenome; feces
867
951
+
Leu
TAG
[ENA]
¢þ
>WENV182105809
OHIF01000339
[OHIF] human gut metagenome; feces
1370
1298
-
Pro
TGG
[ENA]
¢þ
>WENV182105810
OHIF01000505
[OHIF] human gut metagenome; feces
1892
1978
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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