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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHIT] human gut metagenome; feces
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182111898
OHIT01003323
[OHIT] human gut metagenome; feces
9
80
+
Glu
TTC
[ENA]
¢þ
>WENV182111891
OHIT01001775
[OHIT] human gut metagenome; feces
75
1
-
Ala
TGC
[ENA]
¢þ
>WENV182111882
OHIT01001341
[OHIT] human gut metagenome; feces
76
1
-
Gly
CCC
[ENA]
¢þ
>WENV182111897
OHIT01003084
[OHIT] human gut metagenome; feces
89
5
-
Leu
TAG
[ENA]
¢þ
>WENV182111895
OHIT01002375
[OHIT] human gut metagenome; feces
114
39
-
Val
GAC
[ENA]
¢þ
>WENV182111892
OHIT01001864
[OHIT] human gut metagenome; feces
119
37
-
Leu
TAG
[ENA]
¢þ
>WENV182111887
OHIT01001595
[OHIT] human gut metagenome; feces
131
55
-
His
GTG
[ENA]
¢þ
>WENV182111890
OHIT01001775
[OHIT] human gut metagenome; feces
171
95
-
Ile
GAT
[ENA]
¢þ
>WENV182111877
OHIT01000855
[OHIT] human gut metagenome; feces
177
90
-
Ser
TGA
[ENA]
¢þ
>WENV182111878
OHIT01001303
[OHIT] human gut metagenome; feces
201
274
+
Gln
CTG
[ENA]
¢þ
>WENV182111886
OHIT01001595
[OHIT] human gut metagenome; feces
214
138
-
Arg
TCT
[ENA]
¢þ
>WENV182111889
OHIT01001775
[OHIT] human gut metagenome; feces
250
175
-
Ala
TGC
[ENA]
¢þ
>WENV182111879
OHIT01001303
[OHIT] human gut metagenome; feces
308
382
+
Pro
TGG
[ENA]
¢þ
>WENV182111899
OHIT01003549
[OHIT] human gut metagenome; feces
375
448
+
Phe
GAA
[ENA]
¢þ
>WENV182111900
OHIT01003549
[OHIT] human gut metagenome; feces
463
536
+
Pro
CGG
[ENA]
¢þ
>WENV182111896
OHIT01002535
[OHIT] human gut metagenome; feces
661
587
-
Cys
GCA
[ENA]
¢þ
>WENV182111893
OHIT01001912
[OHIT] human gut metagenome; feces
665
738
+
Ala
TGC
[ENA]
¢þ
>WENV182111880
OHIT01001306
[OHIT] human gut metagenome; feces
756
829
+
Glu
CTC
[ENA]
¢þ
>WENV182111894
OHIT01001912
[OHIT] human gut metagenome; feces
761
835
+
Ile
GAT
[ENA]
¢þ
>WENV182111881
OHIT01001306
[OHIT] human gut metagenome; feces
834
909
+
Lys
CTT
[ENA]
¢þ
>WENV182111888
OHIT01001640
[OHIT] human gut metagenome; feces
877
950
+
Trp
CCA
[ENA]
¢þ
>WENV182111885
OHIT01001416
[OHIT] human gut metagenome; feces
1029
1117
+
Ser
GGA
[ENA]
¢þ
>WENV182111884
OHIT01001371
[OHIT] human gut metagenome; feces
1032
1111
+
Leu
CAA
[ENA]
¢þ
>WENV182111883
OHIT01001353
[OHIT] human gut metagenome; feces
1062
1137
+
Ala
CGC
[ENA]
¢þ
>WENV182111876
OHIT01000780
[OHIT] human gut metagenome; feces
1435
1511
+
fMet
CAT
[ENA]
¢þ
>WENV182111872
OHIT01000021
[OHIT] human gut metagenome; feces
1607
1532
-
Val
TAC
[ENA]
¢þ
>WENV182111875
OHIT01000136
[OHIT] human gut metagenome; feces
1681
1607
-
Gly
TCC
[ENA]
¢þ
>WENV182111874
OHIT01000072
[OHIT] human gut metagenome; feces
2137
2063
-
Ala
TGC
[ENA]
¢þ
>WENV182111873
OHIT01000072
[OHIT] human gut metagenome; feces
2221
2147
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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