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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OHJD] human gut metagenome; feces
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182117110
OHJD01000273
[OHJD] human gut metagenome; feces
79
155
+
Ile
GAT
[ENA]
¢þ
>WENV182117106
OHJD01000140
[OHJD] human gut metagenome; feces
95
22
-
Lys
CTT
[ENA]
¢þ
>WENV182117115
OHJD01000374
[OHJD] human gut metagenome; feces
128
211
+
Tyr
GTA
[ENA]
¢þ
>WENV182117116
OHJD01000536
[OHJD] human gut metagenome; feces
191
266
+
Lys
CTT
[ENA]
¢þ
>WENV182117105
OHJD01000140
[OHJD] human gut metagenome; feces
192
119
-
Lys
CTT
[ENA]
¢þ
>WENV182117112
OHJD01000299
[OHJD] human gut metagenome; feces
207
280
+
Ala
TGC
[ENA]
¢þ
>WENV182117104
OHJD01000026
[OHJD] human gut metagenome; feces
259
344
+
Ser
TGA
[ENA]
¢þ
>WENV182117113
OHJD01000299
[OHJD] human gut metagenome; feces
304
380
+
Ile
GAT
[ENA]
¢þ
>WENV182117114
OHJD01000317
[OHJD] human gut metagenome; feces
305
229
-
Val
TAC
[ENA]
¢þ
>WENV182117111
OHJD01000297
[OHJD] human gut metagenome; feces
310
383
+
Phe
GAA
[ENA]
¢þ
>WENV182117117
OHJD01000536
[OHJD] human gut metagenome; feces
317
391
+
Glu
TTC
[ENA]
¢þ
>WENV182117107
OHJD01000161
[OHJD] human gut metagenome; feces
334
409
+
Asp
GTC
[ENA]
¢þ
>WENV182117118
OHJD01000536
[OHJD] human gut metagenome; feces
397
473
+
Val
CAC
[ENA]
¢þ
>WENV182117108
OHJD01000161
[OHJD] human gut metagenome; feces
439
514
+
Val
TAC
[ENA]
¢þ
>WENV182117109
OHJD01000161
[OHJD] human gut metagenome; feces
521
597
+
Asp
GTC
[ENA]
¢þ
>WENV182117103
OHJD01000005
[OHJD] human gut metagenome; feces
2162
2088
-
Ala
TGC
[ENA]
¢þ
>WENV182117102
OHJD01000005
[OHJD] human gut metagenome; feces
2253
2179
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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