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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHMJ] human gut metagenome; feces
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182163404
OHMJ01000048
[OHMJ] human gut metagenome; feces
51
135
+
Leu
TAA
[ENA]
¢þ
>WENV182163420
OHMJ01000876
[OHMJ] human gut metagenome; feces
106
33
-
Arg
CCT
[ENA]
¢þ
>WENV182163421
OHMJ01000939
[OHMJ] human gut metagenome; feces
133
50
-
Tyr
GTA
[ENA]
¢þ
>WENV182163419
OHMJ01000731
[OHMJ] human gut metagenome; feces
223
150
-
Gly
TCC
[ENA]
¢þ
>WENV182163418
OHMJ01000474
[OHMJ] human gut metagenome; feces
227
302
+
Phe
GAA
[ENA]
¢þ
>WENV182163405
OHMJ01000079
[OHMJ] human gut metagenome; feces
228
313
+
Ser
TGA
[ENA]
¢þ
>WENV182163413
OHMJ01000294
[OHMJ] human gut metagenome; feces
230
304
+
Thr
TGT
[ENA]
¢þ
>WENV182163415
OHMJ01000309
[OHMJ] human gut metagenome; feces
232
307
+
Ala
TGC
[ENA]
¢þ
>WENV182163410
OHMJ01000175
[OHMJ] human gut metagenome; feces
265
181
-
Leu
CAA
[ENA]
¢þ
>WENV182163422
OHMJ01000988
[OHMJ] human gut metagenome; feces
271
344
+
Lys
TTT
[ENA]
¢þ
>WENV182163423
OHMJ01001457
[OHMJ] human gut metagenome; feces
295
222
-
Gly
CCC
[ENA]
¢þ
>WENV182163416
OHMJ01000309
[OHMJ] human gut metagenome; feces
332
408
+
Ile
GAT
[ENA]
¢þ
>WENV182163411
OHMJ01000247
[OHMJ] human gut metagenome; feces
402
473
+
Gln
CTG
[ENA]
¢þ
>WENV182163417
OHMJ01000462
[OHMJ] human gut metagenome; feces
428
502
+
Ile2
CAT
[ENA]
¢þ
>WENV182163408
OHMJ01000143
[OHMJ] human gut metagenome; feces
444
518
+
Asn
GTT
[ENA]
¢þ
>WENV182163409
OHMJ01000145
[OHMJ] human gut metagenome; feces
502
575
+
fMet
CAT
[ENA]
¢þ
>WENV182163414
OHMJ01000304
[OHMJ] human gut metagenome; feces
537
450
-
Ser
CGA
[ENA]
¢þ
>WENV182163412
OHMJ01000261
[OHMJ] human gut metagenome; feces
756
681
-
Val
TAC
[ENA]
¢þ
>WENV182163406
OHMJ01000086
[OHMJ] human gut metagenome; feces
853
929
+
Pro
GGG
[ENA]
¢þ
>WENV182163407
OHMJ01000127
[OHMJ] human gut metagenome; feces
1044
972
-
Thr
GGT
[ENA]
¢þ
>WENV182163403
OHMJ01000044
[OHMJ] human gut metagenome; feces
1515
1441
-
Ala
TGC
[ENA]
¢þ
>WENV182163402
OHMJ01000044
[OHMJ] human gut metagenome; feces
1606
1532
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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