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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OHMZ] human gut metagenome; feces
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182172824
OHMZ01000514
[OHMZ] human gut metagenome; feces
43
115
+
Thr
GGT
[ENA]
¢þ
>WENV182172823
OHMZ01000498
[OHMZ] human gut metagenome; feces
113
188
+
Lys
TTT
[ENA]
¢þ
>WENV182172825
OHMZ01000974
[OHMZ] human gut metagenome; feces
114
188
+
Asp
GTC
[ENA]
¢þ
>WENV182172827
OHMZ01001154
[OHMZ] human gut metagenome; feces
138
50
-
Ser
GCT
[ENA]
¢þ
>WENV182172822
OHMZ01000492
[OHMZ] human gut metagenome; feces
211
286
+
Glu
CTC
[ENA]
¢þ
>WENV182172818
OHMZ01000386
[OHMZ] human gut metagenome; feces
232
159
-
Trp
CCA
[ENA]
¢þ
>WENV182172820
OHMZ01000473
[OHMZ] human gut metagenome; feces
257
331
+
Thr
TGT
[ENA]
¢þ
>WENV182172826
OHMZ01001154
[OHMZ] human gut metagenome; feces
332
256
-
Arg
TCT
[ENA]
¢þ
>WENV182172814
OHMZ01000093
[OHMZ] human gut metagenome; feces
376
451
+
Phe
GAA
[ENA]
¢þ
>WENV182172821
OHMZ01000473
[OHMZ] human gut metagenome; feces
411
494
+
Tyr
GTA
[ENA]
¢þ
>WENV182172815
OHMZ01000207
[OHMZ] human gut metagenome; feces
483
558
+
Trp
CCA
[ENA]
¢þ
>WENV182172813
OHMZ01000004
[OHMZ] human gut metagenome; feces
556
481
-
Lys
CTT
[ENA]
¢þ
>WENV182172819
OHMZ01000463
[OHMZ] human gut metagenome; feces
574
662
+
Ser
GCT
[ENA]
¢þ
>WENV182172812
OHMZ01000004
[OHMZ] human gut metagenome; feces
634
560
-
Glu
CTC
[ENA]
¢þ
>WENV182172817
OHMZ01000207
[OHMZ] human gut metagenome; feces
766
691
-
Thr
GGT
[ENA]
¢þ
>WENV182172816
OHMZ01000207
[OHMZ] human gut metagenome; feces
846
770
-
Asp
GTC
[ENA]
¢þ
>WENV182172811
OHMZ01000004
[OHMZ] human gut metagenome; feces
3975
3899
-
Ala
TGC
[ENA]
¢þ
>WENV182172810
OHMZ01000004
[OHMZ] human gut metagenome; feces
4062
3988
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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