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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OHNB] human gut metagenome; feces
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182173532
OHNB01001178
[OHNB] human gut metagenome; feces
5
80
+
Lys
CTT
[ENA]
¢þ
>WENV182173551
OHNB01002587
[OHNB] human gut metagenome; feces
54
129
+
His
GTG
[ENA]
¢þ
>WENV182173517
OHNB01000335
[OHNB] human gut metagenome; feces
72
154
+
Leu
CAG
[ENA]
¢þ
>WENV182173515
OHNB01000302
[OHNB] human gut metagenome; feces
78
5
-
Phe
GAA
[ENA]
¢þ
>WENV182173523
OHNB01000664
[OHNB] human gut metagenome; feces
87
12
-
Asn
GTT
[ENA]
¢þ
>WENV182173500
OHNB01000031
[OHNB] human gut metagenome; feces
87
13
-
Ile2
CAT
[ENA]
¢þ
>WENV182173533
OHNB01001178
[OHNB] human gut metagenome; feces
90
164
+
Glu
TTC
[ENA]
¢þ
>WENV182173549
OHNB01002529
[OHNB] human gut metagenome; feces
101
177
+
Ile
GAT
[ENA]
¢þ
>WENV182173520
OHNB01000336
[OHNB] human gut metagenome; feces
118
46
-
Glu
CTC
[ENA]
¢þ
>WENV182173512
OHNB01000198
[OHNB] human gut metagenome; feces
162
87
-
Val
TAC
[ENA]
¢þ
>WENV182173543
OHNB01001934
[OHNB] human gut metagenome; feces
164
92
-
Arg
CCT
[ENA]
¢þ
>WENV182173534
OHNB01001178
[OHNB] human gut metagenome; feces
169
252
+
Ser
TGA
[ENA]
¢þ
>WENV182173541
OHNB01001726
[OHNB] human gut metagenome; feces
171
95
-
His
GTG
[ENA]
¢þ
>WENV182173518
OHNB01000335
[OHNB] human gut metagenome; feces
180
253
+
Gly
GCC
[ENA]
¢þ
>WENV182173527
OHNB01000773
[OHNB] human gut metagenome; feces
187
272
+
Ser
TGA
[ENA]
¢þ
>WENV182173550
OHNB01002529
[OHNB] human gut metagenome; feces
200
275
+
Ala
TGC
[ENA]
¢þ
>WENV182173511
OHNB01000194
[OHNB] human gut metagenome; feces
208
135
-
Trp
CCA
[ENA]
¢þ
>WENV182173497
OHNB01000002
[OHNB] human gut metagenome; feces
242
167
-
Pro
GGG
[ENA]
¢þ
>WENV182173540
OHNB01001726
[OHNB] human gut metagenome; feces
254
179
-
Arg
TCT
[ENA]
¢þ
>WENV182173539
OHNB01001710
[OHNB] human gut metagenome; feces
255
340
+
Leu
TAA
[ENA]
¢þ
>WENV182173519
OHNB01000336
[OHNB] human gut metagenome; feces
263
176
-
Ser
GCT
[ENA]
¢þ
>WENV182173547
OHNB01002401
[OHNB] human gut metagenome; feces
283
209
-
Glu
TTC
[ENA]
¢þ
>WENV182173548
OHNB01002498
[OHNB] human gut metagenome; feces
315
397
+
Leu
TAG
[ENA]
¢þ
>WENV182173542
OHNB01001809
[OHNB] human gut metagenome; feces
317
241
-
Arg
ACG
[ENA]
¢þ
>WENV182173528
OHNB01000981
[OHNB] human gut metagenome; feces
366
292
-
Sup
CTA
[ENA]
¢þ
>WENV182173535
OHNB01001178
[OHNB] human gut metagenome; feces
370
445
+
Gly
GCC
[ENA]
¢þ
>WENV182173545
OHNB01002070
[OHNB] human gut metagenome; feces
401
327
-
Ala
TGC
[ENA]
¢þ
>WENV182173538
OHNB01001231
[OHNB] human gut metagenome; feces
424
499
+
Gly
GCC
[ENA]
¢þ
>WENV182173546
OHNB01002401
[OHNB] human gut metagenome; feces
452
376
-
Met
CAT
[ENA]
¢þ
>WENV182173536
OHNB01001178
[OHNB] human gut metagenome; feces
476
552
+
Asp
GTC
[ENA]
¢þ
>WENV182173537
OHNB01001178
[OHNB] human gut metagenome; feces
556
631
+
Thr
GGT
[ENA]
¢þ
>WENV182173544
OHNB01002070
[OHNB] human gut metagenome; feces
570
496
-
Ile
GAT
[ENA]
¢þ
>WENV182173525
OHNB01000704
[OHNB] human gut metagenome; feces
587
501
-
Leu
CAG
[ENA]
¢þ
>WENV182173501
OHNB01000033
[OHNB] human gut metagenome; feces
617
544
-
Gly
CCC
[ENA]
¢þ
>WENV182173531
OHNB01001171
[OHNB] human gut metagenome; feces
636
560
-
Asp
GTC
[ENA]
¢þ
>WENV182173529
OHNB01001115
[OHNB] human gut metagenome; feces
713
786
+
Lys
CTT
[ENA]
¢þ
>WENV182173530
OHNB01001171
[OHNB] human gut metagenome; feces
716
641
-
Val
TAC
[ENA]
¢þ
>WENV182173524
OHNB01000704
[OHNB] human gut metagenome; feces
1156
1072
-
Tyr
GTA
[ENA]
¢þ
>WENV182173526
OHNB01000710
[OHNB] human gut metagenome; feces
1192
1119
-
Pro
CGG
[ENA]
¢þ
>WENV182173505
OHNB01000095
[OHNB] human gut metagenome; feces
1408
1336
-
Thr
GGT
[ENA]
¢þ
>WENV182173504
OHNB01000095
[OHNB] human gut metagenome; feces
1507
1424
-
Tyr
GTA
[ENA]
¢þ
>WENV182173503
OHNB01000095
[OHNB] human gut metagenome; feces
1651
1577
-
Thr
TGT
[ENA]
¢þ
>WENV182173522
OHNB01000474
[OHNB] human gut metagenome; feces
2316
2231
-
Leu
TAA
[ENA]
¢þ
>WENV182173521
OHNB01000366
[OHNB] human gut metagenome; feces
3140
3214
+
His
GTG
[ENA]
¢þ
>WENV182173516
OHNB01000307
[OHNB] human gut metagenome; feces
3706
3790
+
Leu
CAA
[ENA]
¢þ
>WENV182173514
OHNB01000294
[OHNB] human gut metagenome; feces
4027
4101
+
Ala
GGC
[ENA]
¢þ
>WENV182173513
OHNB01000205
[OHNB] human gut metagenome; feces
5360
5434
+
Met
CAT
[ENA]
¢þ
>WENV182173506
OHNB01000103
[OHNB] human gut metagenome; feces
5383
5301
-
Leu
TAG
[ENA]
¢þ
>WENV182173507
OHNB01000147
[OHNB] human gut metagenome; feces
5533
5459
-
Asn
GTT
[ENA]
¢þ
>WENV182173502
OHNB01000081
[OHNB] human gut metagenome; feces
6375
6446
+
Gln
TTG
[ENA]
¢þ
>WENV182173510
OHNB01000157
[OHNB] human gut metagenome; feces
6801
6727
-
Arg
TCT
[ENA]
¢þ
>WENV182173509
OHNB01000157
[OHNB] human gut metagenome; feces
6882
6807
-
Lys
TTT
[ENA]
¢þ
>WENV182173508
OHNB01000157
[OHNB] human gut metagenome; feces
6963
6888
-
Gly
TCC
[ENA]
¢þ
>WENV182173495
OHNB01000001
[OHNB] human gut metagenome; feces
10736
10808
+
Glu
TTC
[ENA]
¢þ
>WENV182173499
OHNB01000024
[OHNB] human gut metagenome; feces
14406
14479
+
fMet
CAT
[ENA]
¢þ
>WENV182173498
OHNB01000005
[OHNB] human gut metagenome; feces
15778
15851
+
Thr
CGT
[ENA]
¢þ
>WENV182173496
OHNB01000002
[OHNB] human gut metagenome; feces
30092
30163
+
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK