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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OHNC] human gut metagenome; feces
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182173562
OHNC01000415
[OHNC] human gut metagenome; feces
108
183
+
Trp
CCA
[ENA]
¢þ
>WENV182173566
OHNC01000642
[OHNC] human gut metagenome; feces
138
64
-
Ala
TGC
[ENA]
¢þ
>WENV182173567
OHNC01000786
[OHNC] human gut metagenome; feces
219
149
-
Gln
TTG
[ENA]
¢þ
>WENV182173568
OHNC01000825
[OHNC] human gut metagenome; feces
268
353
+
Ser
TGA
[ENA]
¢þ
>WENV182173559
OHNC01000098
[OHNC] human gut metagenome; feces
348
422
+
Ala
TGC
[ENA]
¢þ
>WENV182173556
OHNC01000038
[OHNC] human gut metagenome; feces
365
437
+
Arg
CCG
[ENA]
¢þ
>WENV182173561
OHNC01000181
[OHNC] human gut metagenome; feces
389
462
+
Asp
GTC
[ENA]
¢þ
>WENV182173564
OHNC01000481
[OHNC] human gut metagenome; feces
467
543
+
Val
TAC
[ENA]
¢þ
>WENV182173565
OHNC01000550
[OHNC] human gut metagenome; feces
594
521
-
Ile
GAT
[ENA]
¢þ
>WENV182173563
OHNC01000454
[OHNC] human gut metagenome; feces
632
559
-
Ile2
CAT
[ENA]
¢þ
>WENV182173558
OHNC01000094
[OHNC] human gut metagenome; feces
761
835
+
Asn
GTT
[ENA]
¢þ
>WENV182173560
OHNC01000170
[OHNC] human gut metagenome; feces
809
885
+
Glu
TTC
[ENA]
¢þ
>WENV182173557
OHNC01000056
[OHNC] human gut metagenome; feces
1052
1136
+
Leu
GAG
[ENA]
¢þ
>WENV182173555
OHNC01000018
[OHNC] human gut metagenome; feces
1106
1032
-
Met
CAT
[ENA]
¢þ
>WENV182173553
OHNC01000013
[OHNC] human gut metagenome; feces
1150
1222
+
Arg
CCT
[ENA]
¢þ
>WENV182173554
OHNC01000018
[OHNC] human gut metagenome; feces
1193
1117
-
Gly
GCC
[ENA]
¢þ
>WENV182173552
OHNC01000003
[OHNC] human gut metagenome; feces
1533
1619
+
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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