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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHND] human gut metagenome; feces
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182173573
OHND01000391
[OHND] human gut metagenome; feces
26
119
+
Ser
GCT
[ENA]
¢þ
>WENV182173585
OHND01003603
[OHND] human gut metagenome; feces
168
93
-
Val
TAC
[ENA]
¢þ
>WENV182173584
OHND01003424
[OHND] human gut metagenome; feces
182
106
-
Arg
CCG
[ENA]
¢þ
>WENV182173587
OHND01003731
[OHND] human gut metagenome; feces
319
245
-
Pro
TGG
[ENA]
¢þ
>WENV182173581
OHND01002914
[OHND] human gut metagenome; feces
341
415
+
Gln
TTG
[ENA]
¢þ
>WENV182173577
OHND01001503
[OHND] human gut metagenome; feces
374
448
+
Gly
TCC
[ENA]
¢þ
>WENV182173582
OHND01003077
[OHND] human gut metagenome; feces
375
464
+
Ser
CGA
[ENA]
¢þ
>WENV182173583
OHND01003149
[OHND] human gut metagenome; feces
393
468
+
Trp
CCA
[ENA]
¢þ
>WENV182173586
OHND01003731
[OHND] human gut metagenome; feces
426
353
-
Gln
CTG
[ENA]
¢þ
>WENV182173576
OHND01001432
[OHND] human gut metagenome; feces
508
433
-
Gly
CCC
[ENA]
¢þ
>WENV182173574
OHND01000514
[OHND] human gut metagenome; feces
572
496
-
Arg
ACG
[ENA]
¢þ
>WENV182173580
OHND01002154
[OHND] human gut metagenome; feces
675
749
+
Ile
GAT
[ENA]
¢þ
>WENV182173578
OHND01001528
[OHND] human gut metagenome; feces
895
969
+
Glu
TTC
[ENA]
¢þ
>WENV182173579
OHND01001822
[OHND] human gut metagenome; feces
901
825
-
Asn
GTT
[ENA]
¢þ
>WENV182173569
OHND01000040
[OHND] human gut metagenome; feces
1009
1085
+
Arg
TCT
[ENA]
¢þ
>WENV182173570
OHND01000040
[OHND] human gut metagenome; feces
1092
1168
+
His
GTG
[ENA]
¢þ
>WENV182173575
OHND01000561
[OHND] human gut metagenome; feces
1606
1517
-
Ser
GGA
[ENA]
¢þ
>WENV182173571
OHND01000117
[OHND] human gut metagenome; feces
1902
1976
+
Ile
GAT
[ENA]
¢þ
>WENV182173572
OHND01000117
[OHND] human gut metagenome; feces
2066
2140
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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