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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHNS] human gut metagenome; feces
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182183051
OHNS01000846
[OHNS] human gut metagenome; feces
22
96
+
Met
CAT
[ENA]
¢þ
>WENV182183046
OHNS01000317
[OHNS] human gut metagenome; feces
143
69
-
Thr
TGT
[ENA]
¢þ
>WENV182183058
OHNS01001077
[OHNS] human gut metagenome; feces
219
144
-
Gly
GCC
[ENA]
¢þ
>WENV182183057
OHNS01001077
[OHNS] human gut metagenome; feces
299
224
-
Phe
GAA
[ENA]
¢þ
>WENV182183060
OHNS01001111
[OHNS] human gut metagenome; feces
303
229
-
Ala
TGC
[ENA]
¢þ
>WENV182183054
OHNS01000991
[OHNS] human gut metagenome; feces
306
232
-
Glu
CTC
[ENA]
¢þ
>WENV182183056
OHNS01001077
[OHNS] human gut metagenome; feces
379
303
-
Asp
GTC
[ENA]
¢þ
>WENV182183059
OHNS01001111
[OHNS] human gut metagenome; feces
394
320
-
Ile
GAT
[ENA]
¢þ
>WENV182183037
OHNS01000103
[OHNS] human gut metagenome; feces
453
525
+
fMet
CAT
[ENA]
¢þ
>WENV182183055
OHNS01001077
[OHNS] human gut metagenome; feces
489
414
-
Val
TAC
[ENA]
¢þ
>WENV182183052
OHNS01000871
[OHNS] human gut metagenome; feces
611
684
+
Glu
TTC
[ENA]
¢þ
>WENV182183053
OHNS01000871
[OHNS] human gut metagenome; feces
694
765
+
Gln
TTG
[ENA]
¢þ
>WENV182183047
OHNS01000326
[OHNS] human gut metagenome; feces
733
646
-
Leu
TAA
[ENA]
¢þ
>WENV182183035
OHNS01000100
[OHNS] human gut metagenome; feces
918
835
-
Leu
TAG
[ENA]
¢þ
>WENV182183033
OHNS01000052
[OHNS] human gut metagenome; feces
1168
1239
+
Gln
TTG
[ENA]
¢þ
>WENV182183050
OHNS01000620
[OHNS] human gut metagenome; feces
1736
1663
-
Gly
CCC
[ENA]
¢þ
>WENV182183049
OHNS01000523
[OHNS] human gut metagenome; feces
1838
1762
-
Ile
GAT
[ENA]
¢þ
>WENV182183048
OHNS01000523
[OHNS] human gut metagenome; feces
1917
1842
-
Ala
TGC
[ENA]
¢þ
>WENV182183045
OHNS01000226
[OHNS] human gut metagenome; feces
1989
1915
-
Asp
GTC
[ENA]
¢þ
>WENV182183044
OHNS01000211
[OHNS] human gut metagenome; feces
2534
2622
+
Ser
GGA
[ENA]
¢þ
>WENV182183040
OHNS01000169
[OHNS] human gut metagenome; feces
3435
3364
-
Cys
GCA
[ENA]
¢þ
>WENV182183043
OHNS01000208
[OHNS] human gut metagenome; feces
3871
3944
+
Lys
TTT
[ENA]
¢þ
>WENV182183039
OHNS01000122
[OHNS] human gut metagenome; feces
4118
4034
-
Leu
CAA
[ENA]
¢þ
>WENV182183041
OHNS01000184
[OHNS] human gut metagenome; feces
4805
4730
-
Val
TAC
[ENA]
¢þ
>WENV182183026
OHNS01000011
[OHNS] human gut metagenome; feces
4817
4899
+
Tyr
GTA
[ENA]
¢þ
>WENV182183027
OHNS01000011
[OHNS] human gut metagenome; feces
4999
5071
+
Thr
GGT
[ENA]
¢þ
>WENV182183042
OHNS01000186
[OHNS] human gut metagenome; feces
5556
5471
-
Ser
TGA
[ENA]
¢þ
>WENV182183038
OHNS01000105
[OHNS] human gut metagenome; feces
5833
5907
+
Ile2
CAT
[ENA]
¢þ
>WENV182183036
OHNS01000102
[OHNS] human gut metagenome; feces
6326
6253
-
Lys
CTT
[ENA]
¢þ
>WENV182183028
OHNS01000011
[OHNS] human gut metagenome; feces
6399
6472
+
Trp
CCA
[ENA]
¢þ
>WENV182183034
OHNS01000052
[OHNS] human gut metagenome; feces
8289
8217
-
Arg
CCT
[ENA]
¢þ
>WENV182183032
OHNS01000050
[OHNS] human gut metagenome; feces
8474
8401
-
Phe
GAA
[ENA]
¢þ
>WENV182183031
OHNS01000050
[OHNS] human gut metagenome; feces
8630
8705
+
Pro
CGG
[ENA]
¢þ
>WENV182183030
OHNS01000037
[OHNS] human gut metagenome; feces
10641
10715
+
Asn
GTT
[ENA]
¢þ
>WENV182183029
OHNS01000016
[OHNS] human gut metagenome; feces
11967
12042
+
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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