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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHOE] human gut metagenome; feces
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182185575
OHOE01000600
[OHOE] human gut metagenome; feces
94
168
+
Arg
ACG
[ENA]
¢þ
>WENV182185558
OHOE01000128
[OHOE] human gut metagenome; feces
197
123
-
Arg
CCG
[ENA]
¢þ
>WENV182185559
OHOE01000169
[OHOE] human gut metagenome; feces
206
280
+
Ile
GAT
[ENA]
¢þ
>WENV182185579
OHOE01000649
[OHOE] human gut metagenome; feces
214
288
+
Leu
CAA
[ENA]
¢þ
>WENV182185574
OHOE01000587
[OHOE] human gut metagenome; feces
237
311
+
Pro
CGG
[ENA]
¢þ
>WENV182185589
OHOE01001069
[OHOE] human gut metagenome; feces
257
182
-
Pro
TGG
[ENA]
¢þ
>WENV182185556
OHOE01000090
[OHOE] human gut metagenome; feces
290
373
+
Leu
CAG
[ENA]
¢þ
>WENV182185560
OHOE01000169
[OHOE] human gut metagenome; feces
297
371
+
Ala
TGC
[ENA]
¢þ
>WENV182185549
OHOE01000017
[OHOE] human gut metagenome; feces
301
389
+
Ser
GGA
[ENA]
¢þ
>WENV182185577
OHOE01000636
[OHOE] human gut metagenome; feces
316
389
+
Arg
CCT
[ENA]
¢þ
>WENV182185588
OHOE01001023
[OHOE] human gut metagenome; feces
344
419
+
Trp
CCA
[ENA]
¢þ
>WENV182185594
OHOE01001461
[OHOE] human gut metagenome; feces
350
275
-
Phe
GAA
[ENA]
¢þ
>WENV182185591
OHOE01001311
[OHOE] human gut metagenome; feces
350
437
+
Ser
TGA
[ENA]
¢þ
>WENV182185586
OHOE01000980
[OHOE] human gut metagenome; feces
354
427
+
Asn
GTT
[ENA]
¢þ
>WENV182185590
OHOE01001196
[OHOE] human gut metagenome; feces
387
460
+
Gly
CCC
[ENA]
¢þ
>WENV182185585
OHOE01000751
[OHOE] human gut metagenome; feces
406
480
+
Lys
CTT
[ENA]
¢þ
>WENV182185587
OHOE01001021
[OHOE] human gut metagenome; feces
424
350
-
Val
TAC
[ENA]
¢þ
>WENV182185593
OHOE01001461
[OHOE] human gut metagenome; feces
429
354
-
fMet
CAT
[ENA]
¢þ
>WENV182185584
OHOE01000741
[OHOE] human gut metagenome; feces
466
539
+
Lys
TTT
[ENA]
¢þ
>WENV182185592
OHOE01001311
[OHOE] human gut metagenome; feces
467
558
+
Ser
GCT
[ENA]
¢þ
>WENV182185561
OHOE01000190
[OHOE] human gut metagenome; feces
479
553
+
Thr
TGT
[ENA]
¢þ
>WENV182185580
OHOE01000685
[OHOE] human gut metagenome; feces
488
570
+
Tyr
GTA
[ENA]
¢þ
>WENV182185565
OHOE01000290
[OHOE] human gut metagenome; feces
529
601
+
Val
GAC
[ENA]
¢þ
>WENV182185578
OHOE01000647
[OHOE] human gut metagenome; feces
531
611
+
Leu
TAA
[ENA]
¢þ
>WENV182185582
OHOE01000734
[OHOE] human gut metagenome; feces
589
664
+
Ala
TGC
[ENA]
¢þ
>WENV182185569
OHOE01000464
[OHOE] human gut metagenome; feces
607
531
-
fMet
CAT
[ENA]
¢þ
>WENV182185566
OHOE01000290
[OHOE] human gut metagenome; feces
646
719
+
Val
CAC
[ENA]
¢þ
>WENV182185581
OHOE01000685
[OHOE] human gut metagenome; feces
648
722
+
Met
CAT
[ENA]
¢þ
>WENV182185557
OHOE01000099
[OHOE] human gut metagenome; feces
667
582
-
Ser
TGA
[ENA]
¢þ
>WENV182185583
OHOE01000734
[OHOE] human gut metagenome; feces
668
744
+
Ile
GAT
[ENA]
¢þ
>WENV182185555
OHOE01000070
[OHOE] human gut metagenome; feces
749
823
+
Asp
GTC
[ENA]
¢þ
>WENV182185571
OHOE01000515
[OHOE] human gut metagenome; feces
904
822
-
Tyr
GTA
[ENA]
¢þ
>WENV182185562
OHOE01000214
[OHOE] human gut metagenome; feces
946
1022
+
Arg
TCT
[ENA]
¢þ
>WENV182185576
OHOE01000627
[OHOE] human gut metagenome; feces
957
868
-
Ser
GCT
[ENA]
¢þ
>WENV182185564
OHOE01000242
[OHOE] human gut metagenome; feces
984
1060
+
Pro
GGG
[ENA]
¢þ
>WENV182185568
OHOE01000415
[OHOE] human gut metagenome; feces
993
920
-
Gly
TCC
[ENA]
¢þ
>WENV182185572
OHOE01000542
[OHOE] human gut metagenome; feces
1016
1087
+
Asn
GTT
[ENA]
¢þ
>WENV182185573
OHOE01000542
[OHOE] human gut metagenome; feces
1092
1165
+
Glu
TTC
[ENA]
¢þ
>WENV182185570
OHOE01000515
[OHOE] human gut metagenome; feces
1140
1068
-
Glu
TTC
[ENA]
¢þ
>WENV182185567
OHOE01000304
[OHOE] human gut metagenome; feces
1229
1315
+
Ser
CGA
[ENA]
¢þ
>WENV182185563
OHOE01000239
[OHOE] human gut metagenome; feces
1569
1650
+
Leu
TAG
[ENA]
¢þ
>WENV182185554
OHOE01000051
[OHOE] human gut metagenome; feces
3177
3096
-
Leu
TAG
[ENA]
¢þ
>WENV182185550
OHOE01000019
[OHOE] human gut metagenome; feces
3609
3683
+
Ile
GAT
[ENA]
¢þ
>WENV182185551
OHOE01000019
[OHOE] human gut metagenome; feces
3725
3798
+
Ala
TGC
[ENA]
¢þ
>WENV182185553
OHOE01000025
[OHOE] human gut metagenome; feces
3772
3698
-
Ile
TAT
[ENA]
¢þ
>WENV182185552
OHOE01000019
[OHOE] human gut metagenome; feces
3799
3872
+
Ala
GGC
[ENA]
¢þ
>WENV182185547
OHOE01000011
[OHOE] human gut metagenome; feces
4481
4554
+
Glu
CTC
[ENA]
¢þ
>WENV182185548
OHOE01000011
[OHOE] human gut metagenome; feces
4592
4666
+
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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