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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHOF] human gut metagenome; feces
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182185607
OHOF01000637
[OHOF] human gut metagenome; feces
95
24
-
Gln
TTG
[ENA]
¢þ
>WENV182185598
OHOF01000079
[OHOF] human gut metagenome; feces
165
240
+
Lys
CTT
[ENA]
¢þ
>WENV182185599
OHOF01000079
[OHOF] human gut metagenome; feces
291
365
+
Glu
CTC
[ENA]
¢þ
>WENV182185596
OHOF01000057
[OHOF] human gut metagenome; feces
295
372
+
Ile
GAT
[ENA]
¢þ
>WENV182185609
OHOF01000850
[OHOF] human gut metagenome; feces
332
403
+
Gln
CTG
[ENA]
¢þ
>WENV182185610
OHOF01000951
[OHOF] human gut metagenome; feces
334
244
-
Ser
GGA
[ENA]
¢þ
>WENV182185603
OHOF01000371
[OHOF] human gut metagenome; feces
362
287
-
Lys
CTT
[ENA]
¢þ
>WENV182185608
OHOF01000778
[OHOF] human gut metagenome; feces
369
444
+
Lys
TTT
[ENA]
¢þ
>WENV182185601
OHOF01000116
[OHOF] human gut metagenome; feces
375
301
-
Met
CAT
[ENA]
¢þ
>WENV182185611
OHOF01001013
[OHOF] human gut metagenome; feces
378
307
-
Trp
CCA
[ENA]
¢þ
>WENV182185597
OHOF01000057
[OHOF] human gut metagenome; feces
452
526
+
Ala
TGC
[ENA]
¢þ
>WENV182185605
OHOF01000437
[OHOF] human gut metagenome; feces
466
541
+
Lys
CTT
[ENA]
¢þ
>WENV182185604
OHOF01000394
[OHOF] human gut metagenome; feces
505
577
+
Thr
GGT
[ENA]
¢þ
>WENV182185606
OHOF01000619
[OHOF] human gut metagenome; feces
533
441
-
Ser
GCT
[ENA]
¢þ
>WENV182185600
OHOF01000079
[OHOF] human gut metagenome; feces
550
626
+
Ile
GAT
[ENA]
¢þ
>WENV182185602
OHOF01000339
[OHOF] human gut metagenome; feces
581
509
-
Glu
TTC
[ENA]
¢þ
>WENV182185595
OHOF01000046
[OHOF] human gut metagenome; feces
742
668
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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