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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OHOS] human gut metagenome; feces
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182191613
OHOS01000120
[OHOS] human gut metagenome; feces
199
272
+
fMet
CAT
[ENA]
¢þ
>WENV182191606
OHOS01000013
[OHOS] human gut metagenome; feces
247
321
+
Ile2
CAT
[ENA]
¢þ
>WENV182191622
OHOS01000856
[OHOS] human gut metagenome; feces
291
217
-
Arg
TCT
[ENA]
¢þ
>WENV182191623
OHOS01001186
[OHOS] human gut metagenome; feces
315
244
-
Gln
TTG
[ENA]
¢þ
>WENV182191621
OHOS01000516
[OHOS] human gut metagenome; feces
357
430
+
Phe
GAA
[ENA]
¢þ
>WENV182191612
OHOS01000083
[OHOS] human gut metagenome; feces
424
351
-
fMet
CAT
[ENA]
¢þ
>WENV182191614
OHOS01000120
[OHOS] human gut metagenome; feces
489
562
+
Asn
GTT
[ENA]
¢þ
>WENV182191624
OHOS01001764
[OHOS] human gut metagenome; feces
496
422
-
Cys
GCA
[ENA]
¢þ
>WENV182191615
OHOS01000120
[OHOS] human gut metagenome; feces
569
642
+
Trp
CCA
[ENA]
¢þ
>WENV182191616
OHOS01000120
[OHOS] human gut metagenome; feces
647
718
+
Gln
TTG
[ENA]
¢þ
>WENV182191619
OHOS01000129
[OHOS] human gut metagenome; feces
652
725
+
fMet
CAT
[ENA]
¢þ
>WENV182191620
OHOS01000441
[OHOS] human gut metagenome; feces
692
617
-
Pro
TGG
[ENA]
¢þ
>WENV182191617
OHOS01000120
[OHOS] human gut metagenome; feces
723
795
+
Glu
TTC
[ENA]
¢þ
>WENV182191611
OHOS01000031
[OHOS] human gut metagenome; feces
785
712
-
Trp
CCA
[ENA]
¢þ
>WENV182191618
OHOS01000120
[OHOS] human gut metagenome; feces
958
1040
+
Tyr
GTA
[ENA]
¢þ
>WENV182191610
OHOS01000031
[OHOS] human gut metagenome; feces
2150
2078
-
Thr
GGT
[ENA]
¢þ
>WENV182191609
OHOS01000031
[OHOS] human gut metagenome; feces
2325
2242
-
Tyr
GTA
[ENA]
¢þ
>WENV182191607
OHOS01000018
[OHOS] human gut metagenome; feces
2741
2815
+
Ile
GAT
[ENA]
¢þ
>WENV182191608
OHOS01000018
[OHOS] human gut metagenome; feces
2832
2906
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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