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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHOW] human gut metagenome; feces
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182191691
OHOW01000571
[OHOW] human gut metagenome; feces
129
56
-
Lys
TTT
[ENA]
¢þ
>WENV182191688
OHOW01000405
[OHOW] human gut metagenome; feces
288
213
-
Thr
GGT
[ENA]
¢þ
>WENV182191690
OHOW01000457
[OHOW] human gut metagenome; feces
310
386
+
Ala
GGC
[ENA]
¢þ
>WENV182191689
OHOW01000453
[OHOW] human gut metagenome; feces
360
287
-
Trp
CCA
[ENA]
¢þ
>WENV182191685
OHOW01000064
[OHOW] human gut metagenome; feces
442
370
-
Thr
GGT
[ENA]
¢þ
>WENV182191687
OHOW01000153
[OHOW] human gut metagenome; feces
450
535
+
Leu
CAA
[ENA]
¢þ
>WENV182191692
OHOW01000646
[OHOW] human gut metagenome; feces
480
404
-
Val
TAC
[ENA]
¢þ
>WENV182191684
OHOW01000064
[OHOW] human gut metagenome; feces
643
560
-
Tyr
GTA
[ENA]
¢þ
>WENV182191686
OHOW01000152
[OHOW] human gut metagenome; feces
691
615
-
Arg
ACG
[ENA]
¢þ
>WENV182191683
OHOW01000064
[OHOW] human gut metagenome; feces
760
686
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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