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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHPN] human gut metagenome; feces
HIT:
59 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182201816
OHPN01002119
[OHPN] human gut metagenome; feces
46
119
+
Gly
TCC
[ENA]
¢þ
>WENV182201819
OHPN01002615
[OHPN] human gut metagenome; feces
72
148
+
Ile
GAT
[ENA]
¢þ
>WENV182201806
OHPN01001498
[OHPN] human gut metagenome; feces
85
9
-
Arg
CCG
[ENA]
¢þ
>WENV182201813
OHPN01001911
[OHPN] human gut metagenome; feces
110
34
-
Asp
GTC
[ENA]
¢þ
>WENV182201817
OHPN01002119
[OHPN] human gut metagenome; feces
123
196
+
Arg
TCT
[ENA]
¢þ
>WENV182201793
OHPN01000891
[OHPN] human gut metagenome; feces
134
58
-
Ala
TGC
[ENA]
¢þ
>WENV182201787
OHPN01000490
[OHPN] human gut metagenome; feces
150
76
-
Ile2
CAT
[ENA]
¢þ
>WENV182201800
OHPN01001288
[OHPN] human gut metagenome; feces
153
235
+
Leu
TAG
[ENA]
¢þ
>WENV182201791
OHPN01000643
[OHPN] human gut metagenome; feces
157
83
-
Asp
GTC
[ENA]
¢þ
>WENV182201814
OHPN01001962
[OHPN] human gut metagenome; feces
159
241
+
Leu
TAG
[ENA]
¢þ
>WENV182201786
OHPN01000457
[OHPN] human gut metagenome; feces
165
93
-
Arg
CCT
[ENA]
¢þ
>WENV182201784
OHPN01000428
[OHPN] human gut metagenome; feces
171
97
-
His
GTG
[ENA]
¢þ
>WENV182201812
OHPN01001911
[OHPN] human gut metagenome; feces
190
115
-
Val
TAC
[ENA]
¢þ
>WENV182201801
OHPN01001313
[OHPN] human gut metagenome; feces
196
271
+
Trp
CCA
[ENA]
¢þ
>WENV182201772
OHPN01000202
[OHPN] human gut metagenome; feces
200
127
-
fMet
CAT
[ENA]
¢þ
>WENV182201818
OHPN01002119
[OHPN] human gut metagenome; feces
205
281
+
His
GTG
[ENA]
¢þ
>WENV182201799
OHPN01001004
[OHPN] human gut metagenome; feces
208
134
-
Glu
TTC
[ENA]
¢þ
>WENV182201811
OHPN01001911
[OHPN] human gut metagenome; feces
274
199
-
Phe
GAA
[ENA]
¢þ
>WENV182201796
OHPN01000991
[OHPN] human gut metagenome; feces
293
218
-
Val
TAC
[ENA]
¢þ
>WENV182201802
OHPN01001313
[OHPN] human gut metagenome; feces
310
386
+
Asp
GTC
[ENA]
¢þ
>WENV182201780
OHPN01000290
[OHPN] human gut metagenome; feces
312
383
+
Gln
CTG
[ENA]
¢þ
>WENV182201810
OHPN01001911
[OHPN] human gut metagenome; feces
366
283
-
Ser
TGA
[ENA]
¢þ
>WENV182201798
OHPN01001004
[OHPN] human gut metagenome; feces
377
301
-
Met
CAT
[ENA]
¢þ
>WENV182201795
OHPN01000991
[OHPN] human gut metagenome; feces
390
316
-
Asn
GTT
[ENA]
¢þ
>WENV182201807
OHPN01001672
[OHPN] human gut metagenome; feces
399
474
+
Val
GAC
[ENA]
¢þ
>WENV182201792
OHPN01000856
[OHPN] human gut metagenome; feces
401
327
-
Sup
CTA
[ENA]
¢þ
>WENV182201815
OHPN01002011
[OHPN] human gut metagenome; feces
443
519
+
Asn
GTT
[ENA]
¢þ
>WENV182201809
OHPN01001911
[OHPN] human gut metagenome; feces
467
393
-
Glu
TTC
[ENA]
¢þ
>WENV182201797
OHPN01001004
[OHPN] human gut metagenome; feces
477
404
-
Val
TAC
[ENA]
¢þ
>WENV182201805
OHPN01001494
[OHPN] human gut metagenome; feces
499
426
-
Gln
CTG
[ENA]
¢þ
>WENV182201803
OHPN01001313
[OHPN] human gut metagenome; feces
499
574
+
Gly
GCC
[ENA]
¢þ
>WENV182201808
OHPN01001911
[OHPN] human gut metagenome; feces
551
476
-
Lys
CTT
[ENA]
¢þ
>WENV182201804
OHPN01001313
[OHPN] human gut metagenome; feces
602
676
+
Cys
GCA
[ENA]
¢þ
>WENV182201794
OHPN01000922
[OHPN] human gut metagenome; feces
724
810
+
Leu
CAG
[ENA]
¢þ
>WENV182201783
OHPN01000392
[OHPN] human gut metagenome; feces
776
860
+
Leu
CAA
[ENA]
¢þ
>WENV182201789
OHPN01000525
[OHPN] human gut metagenome; feces
1001
916
-
Ser
TGA
[ENA]
¢þ
>WENV182201769
OHPN01000084
[OHPN] human gut metagenome; feces
1164
1082
-
Leu
TAG
[ENA]
¢þ
>WENV182201771
OHPN01000175
[OHPN] human gut metagenome; feces
1245
1172
-
Gly
CCC
[ENA]
¢þ
>WENV182201777
OHPN01000239
[OHPN] human gut metagenome; feces
1397
1324
-
Thr
CGT
[ENA]
¢þ
>WENV182201782
OHPN01000331
[OHPN] human gut metagenome; feces
1398
1326
-
Thr
GGT
[ENA]
¢þ
>WENV182201790
OHPN01000575
[OHPN] human gut metagenome; feces
1449
1523
+
Asn
GTT
[ENA]
¢þ
>WENV182201781
OHPN01000331
[OHPN] human gut metagenome; feces
1497
1414
-
Tyr
GTA
[ENA]
¢þ
>WENV182201762
OHPN01000006
[OHPN] human gut metagenome; feces
1582
1509
-
Phe
GAA
[ENA]
¢þ
>WENV182201788
OHPN01000521
[OHPN] human gut metagenome; feces
1589
1663
+
Ala
GGC
[ENA]
¢þ
>WENV182201775
OHPN01000209
[OHPN] human gut metagenome; feces
2028
1955
-
Lys
CTT
[ENA]
¢þ
>WENV182201774
OHPN01000209
[OHPN] human gut metagenome; feces
2117
2045
-
Glu
CTC
[ENA]
¢þ
>WENV182201785
OHPN01000433
[OHPN] human gut metagenome; feces
2201
2127
-
Arg
TCT
[ENA]
¢þ
>WENV182201773
OHPN01000209
[OHPN] human gut metagenome; feces
2262
2175
-
Ser
GCT
[ENA]
¢þ
>WENV182201778
OHPN01000251
[OHPN] human gut metagenome; feces
2615
2689
+
Ile
GAT
[ENA]
¢þ
>WENV182201779
OHPN01000251
[OHPN] human gut metagenome; feces
2784
2858
+
Ala
TGC
[ENA]
¢þ
>WENV182201776
OHPN01000235
[OHPN] human gut metagenome; feces
5040
5115
+
Pro
GGG
[ENA]
¢þ
>WENV182201770
OHPN01000105
[OHPN] human gut metagenome; feces
5235
5307
+
Cys
GCA
[ENA]
¢þ
>WENV182201768
OHPN01000049
[OHPN] human gut metagenome; feces
8824
8749
-
Val
TAC
[ENA]
¢þ
>WENV182201766
OHPN01000037
[OHPN] human gut metagenome; feces
11434
11507
+
Gly
GCC
[ENA]
¢þ
>WENV182201767
OHPN01000037
[OHPN] human gut metagenome; feces
11523
11608
+
Leu
TAA
[ENA]
¢þ
>WENV182201764
OHPN01000009
[OHPN] human gut metagenome; feces
16646
16573
-
Trp
CCA
[ENA]
¢þ
>WENV182201765
OHPN01000029
[OHPN] human gut metagenome; feces
18402
18473
+
Gln
TTG
[ENA]
¢þ
>WENV182201763
OHPN01000008
[OHPN] human gut metagenome; feces
21868
21940
+
Glu
TTC
[ENA]
¢þ
>WENV182201761
OHPN01000001
[OHPN] human gut metagenome; feces
22428
22355
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK