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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OHQD] human gut metagenome; feces
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182210508
OHQD01000929
[OHQD] human gut metagenome; feces
188
112
-
Gly
GCC
[ENA]
¢þ
>WENV182210504
OHQD01000765
[OHQD] human gut metagenome; feces
198
116
-
Leu
TAG
[ENA]
¢þ
>WENV182210509
OHQD01001192
[OHQD] human gut metagenome; feces
202
109
-
Ser
GCT
[ENA]
¢þ
>WENV182210491
OHQD01000005
[OHQD] human gut metagenome; feces
211
137
-
Ala
TGC
[ENA]
¢þ
>WENV182210499
OHQD01000153
[OHQD] human gut metagenome; feces
215
286
+
Cys
GCA
[ENA]
¢þ
>WENV182210503
OHQD01000737
[OHQD] human gut metagenome; feces
230
302
+
Arg
CCT
[ENA]
¢þ
>WENV182210505
OHQD01000825
[OHQD] human gut metagenome; feces
270
182
-
Ser
GGA
[ENA]
¢þ
>WENV182210490
OHQD01000005
[OHQD] human gut metagenome; feces
302
228
-
Ile
GAT
[ENA]
¢þ
>WENV182210506
OHQD01000900
[OHQD] human gut metagenome; feces
326
408
+
Leu
CAG
[ENA]
¢þ
>WENV182210494
OHQD01000037
[OHQD] human gut metagenome; feces
349
425
+
fMet
CAT
[ENA]
¢þ
>WENV182210502
OHQD01000628
[OHQD] human gut metagenome; feces
350
263
-
Ser
TGA
[ENA]
¢þ
>WENV182210501
OHQD01000611
[OHQD] human gut metagenome; feces
415
491
+
Arg
ACG
[ENA]
¢þ
>WENV182210507
OHQD01000900
[OHQD] human gut metagenome; feces
439
514
+
Gly
GCC
[ENA]
¢þ
>WENV182210495
OHQD01000037
[OHQD] human gut metagenome; feces
443
516
+
Asp
GTC
[ENA]
¢þ
>WENV182210500
OHQD01000489
[OHQD] human gut metagenome; feces
599
524
-
Arg
TCT
[ENA]
¢þ
>WENV182210498
OHQD01000083
[OHQD] human gut metagenome; feces
652
728
+
Glu
TTC
[ENA]
¢þ
>WENV182210496
OHQD01000064
[OHQD] human gut metagenome; feces
740
814
+
Asn
GTT
[ENA]
¢þ
>WENV182210493
OHQD01000028
[OHQD] human gut metagenome; feces
763
690
-
Ile
GAT
[ENA]
¢þ
>WENV182210492
OHQD01000028
[OHQD] human gut metagenome; feces
851
776
-
Ala
TGC
[ENA]
¢þ
>WENV182210497
OHQD01000074
[OHQD] human gut metagenome; feces
935
1022
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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