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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHSC] human gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182239842
OHSC01001258
[OHSC] human gut metagenome; feces
74
147
+
Gly
GCC
[ENA]
¢þ
>WENV182239830
OHSC01000031
[OHSC] human gut metagenome; feces
99
183
+
Leu
CAA
[ENA]
¢þ
>WENV182239843
OHSC01001258
[OHSC] human gut metagenome; feces
153
227
+
Asp
GTC
[ENA]
¢þ
>WENV182239838
OHSC01000557
[OHSC] human gut metagenome; feces
192
282
+
Ser
CGA
[ENA]
¢þ
>WENV182239831
OHSC01000061
[OHSC] human gut metagenome; feces
203
291
+
Ser
GGA
[ENA]
¢þ
>WENV182239834
OHSC01000303
[OHSC] human gut metagenome; feces
230
305
+
Pro
GGG
[ENA]
¢þ
>WENV182239844
OHSC01001492
[OHSC] human gut metagenome; feces
265
339
+
His
GTG
[ENA]
¢þ
>WENV182239846
OHSC01001610
[OHSC] human gut metagenome; feces
316
243
-
Pro
TGG
[ENA]
¢þ
>WENV182239841
OHSC01000879
[OHSC] human gut metagenome; feces
379
304
-
Val
GAC
[ENA]
¢þ
>WENV182239836
OHSC01000462
[OHSC] human gut metagenome; feces
394
320
-
Ile
GAT
[ENA]
¢þ
>WENV182239845
OHSC01001610
[OHSC] human gut metagenome; feces
421
348
-
Gln
CTG
[ENA]
¢þ
>WENV182239837
OHSC01000491
[OHSC] human gut metagenome; feces
472
399
-
Phe
GAA
[ENA]
¢þ
>WENV182239839
OHSC01000728
[OHSC] human gut metagenome; feces
482
407
-
Lys
TTT
[ENA]
¢þ
>WENV182239840
OHSC01000808
[OHSC] human gut metagenome; feces
586
514
-
fMet
CAT
[ENA]
¢þ
>WENV182239835
OHSC01000361
[OHSC] human gut metagenome; feces
601
674
+
Thr
CGT
[ENA]
¢þ
>WENV182239829
OHSC01000017
[OHSC] human gut metagenome; feces
819
743
-
Ile
GAT
[ENA]
¢þ
>WENV182239828
OHSC01000017
[OHSC] human gut metagenome; feces
898
823
-
Ala
TGC
[ENA]
¢þ
>WENV182239833
OHSC01000073
[OHSC] human gut metagenome; feces
909
833
-
Ala
TGC
[ENA]
¢þ
>WENV182239832
OHSC01000073
[OHSC] human gut metagenome; feces
994
920
-
Ile
GAT
[ENA]
¢þ
>WENV182239827
OHSC01000014
[OHSC] human gut metagenome; feces
2171
2097
-
Ala
TGC
[ENA]
¢þ
>WENV182239826
OHSC01000014
[OHSC] human gut metagenome; feces
2260
2186
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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