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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHTR] human gut metagenome; feces
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182263260
OHTR01001224
[OHTR] human gut metagenome; feces
98
22
-
Arg
TCT
[ENA]
¢þ
>WENV182263263
OHTR01001748
[OHTR] human gut metagenome; feces
108
179
+
Glu
TTC
[ENA]
¢þ
>WENV182263254
OHTR01001084
[OHTR] human gut metagenome; feces
115
42
-
Lys
CTT
[ENA]
¢þ
>WENV182263261
OHTR01001531
[OHTR] human gut metagenome; feces
121
47
-
His
GTG
[ENA]
¢þ
>WENV182263262
OHTR01001713
[OHTR] human gut metagenome; feces
157
87
-
Gly
CCC
[ENA]
¢þ
>WENV182263259
OHTR01001224
[OHTR] human gut metagenome; feces
187
117
-
Gly
TCC
[ENA]
¢þ
>WENV182263249
OHTR01000482
[OHTR] human gut metagenome; feces
238
166
-
Thr
GGT
[ENA]
¢þ
>WENV182263258
OHTR01001224
[OHTR] human gut metagenome; feces
265
192
-
Phe
GAA
[ENA]
¢þ
>WENV182263264
OHTR01001748
[OHTR] human gut metagenome; feces
278
351
+
Asn
GTT
[ENA]
¢þ
>WENV182263251
OHTR01000525
[OHTR] human gut metagenome; feces
314
387
+
Phe
GAA
[ENA]
¢þ
>WENV182263253
OHTR01000698
[OHTR] human gut metagenome; feces
329
254
-
Val
TAC
[ENA]
¢þ
>WENV182263257
OHTR01001224
[OHTR] human gut metagenome; feces
371
284
-
Leu
TAA
[ENA]
¢þ
>WENV182263265
OHTR01001748
[OHTR] human gut metagenome; feces
387
459
+
Cys
GCA
[ENA]
¢þ
>WENV182263248
OHTR01000482
[OHTR] human gut metagenome; feces
435
352
-
Tyr
GTA
[ENA]
¢þ
>WENV182263256
OHTR01001224
[OHTR] human gut metagenome; feces
473
398
-
Asp
GTC
[ENA]
¢þ
>WENV182263250
OHTR01000514
[OHTR] human gut metagenome; feces
508
581
+
Trp
CCA
[ENA]
¢þ
>WENV182263255
OHTR01001224
[OHTR] human gut metagenome; feces
560
485
-
Ile2
CAT
[ENA]
¢þ
>WENV182263252
OHTR01000533
[OHTR] human gut metagenome; feces
633
704
+
Gln
TTG
[ENA]
¢þ
>WENV182263247
OHTR01000100
[OHTR] human gut metagenome; feces
1448
1519
+
Gln
TTG
[ENA]
¢þ
>WENV182263243
OHTR01000009
[OHTR] human gut metagenome; feces
1833
1907
+
Ile
GAT
[ENA]
¢þ
>WENV182263246
OHTR01000020
[OHTR] human gut metagenome; feces
3156
3069
-
Leu
TAA
[ENA]
¢þ
>WENV182263241
OHTR01000008
[OHTR] human gut metagenome; feces
3439
3515
+
Ile
GAT
[ENA]
¢þ
>WENV182263242
OHTR01000008
[OHTR] human gut metagenome; feces
3544
3618
+
Ala
TGC
[ENA]
¢þ
>WENV182263244
OHTR01000009
[OHTR] human gut metagenome; feces
5321
5395
+
Asn
GTT
[ENA]
¢þ
>WENV182263245
OHTR01000009
[OHTR] human gut metagenome; feces
5398
5483
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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