This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OHUX] human gut metagenome; feces
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182280334
OHUX01001145
[OHUX] human gut metagenome; feces
15
88
+
Gly
TCC
[ENA]
¢þ
>WENV182280322
OHUX01000800
[OHUX] human gut metagenome; feces
33
107
+
Glu
TTC
[ENA]
¢þ
>WENV182280337
OHUX01001537
[OHUX] human gut metagenome; feces
77
1
-
Val
CAC
[ENA]
¢þ
>WENV182280345
OHUX01002593
[OHUX] human gut metagenome; feces
98
183
+
Tyr
GTA
[ENA]
¢þ
>WENV182280323
OHUX01000800
[OHUX] human gut metagenome; feces
111
186
+
Val
TAC
[ENA]
¢þ
>WENV182280295
OHUX01000022
[OHUX] human gut metagenome; feces
132
207
+
Thr
CGT
[ENA]
¢þ
>WENV182280342
OHUX01001838
[OHUX] human gut metagenome; feces
143
68
-
Ala
GGC
[ENA]
¢þ
>WENV182280346
OHUX01002683
[OHUX] human gut metagenome; feces
153
79
-
Asn
GTT
[ENA]
¢þ
>WENV182280338
OHUX01001557
[OHUX] human gut metagenome; feces
163
237
+
Glu
CTC
[ENA]
¢þ
>WENV182280336
OHUX01001384
[OHUX] human gut metagenome; feces
183
258
+
Val
GAC
[ENA]
¢þ
>WENV182280324
OHUX01000800
[OHUX] human gut metagenome; feces
191
267
+
Asp
GTC
[ENA]
¢þ
>WENV182280321
OHUX01000658
[OHUX] human gut metagenome; feces
263
349
+
Leu
CAG
[ENA]
¢þ
>WENV182280325
OHUX01000800
[OHUX] human gut metagenome; feces
275
350
+
Phe
GAA
[ENA]
¢þ
>WENV182280339
OHUX01001557
[OHUX] human gut metagenome; feces
279
355
+
Asn
GTT
[ENA]
¢þ
>WENV182280344
OHUX01002342
[OHUX] human gut metagenome; feces
282
207
-
Glu
CTC
[ENA]
¢þ
>WENV182280326
OHUX01000800
[OHUX] human gut metagenome; feces
356
440
+
Leu
GAG
[ENA]
¢þ
>WENV182280333
OHUX01000972
[OHUX] human gut metagenome; feces
385
311
-
Gln
TTG
[ENA]
¢þ
>WENV182280343
OHUX01001840
[OHUX] human gut metagenome; feces
387
313
-
Arg
CCG
[ENA]
¢þ
>WENV182280329
OHUX01000828
[OHUX] human gut metagenome; feces
412
321
-
Ser
GGA
[ENA]
¢þ
>WENV182280327
OHUX01000800
[OHUX] human gut metagenome; feces
473
557
+
Leu
CAG
[ENA]
¢þ
>WENV182280340
OHUX01001702
[OHUX] human gut metagenome; feces
487
410
-
Arg
CCT
[ENA]
¢þ
>WENV182280332
OHUX01000972
[OHUX] human gut metagenome; feces
508
432
-
His
GTG
[ENA]
¢þ
>WENV182280341
OHUX01001754
[OHUX] human gut metagenome; feces
524
599
+
Arg
CCG
[ENA]
¢þ
>WENV182280330
OHUX01000923
[OHUX] human gut metagenome; feces
568
644
+
Ile2
CAT
[ENA]
¢þ
>WENV182280328
OHUX01000824
[OHUX] human gut metagenome; feces
569
480
-
Ser
TGA
[ENA]
¢þ
>WENV182280310
OHUX01000105
[OHUX] human gut metagenome; feces
587
663
+
Ile
GAT
[ENA]
¢þ
>WENV182280331
OHUX01000972
[OHUX] human gut metagenome; feces
590
515
-
Arg
TCT
[ENA]
¢þ
>WENV182280335
OHUX01001199
[OHUX] human gut metagenome; feces
715
800
+
Leu
CAA
[ENA]
¢þ
>WENV182280311
OHUX01000105
[OHUX] human gut metagenome; feces
724
799
+
Ala
TGC
[ENA]
¢þ
>WENV182280320
OHUX01000634
[OHUX] human gut metagenome; feces
817
743
-
Ala
TGC
[ENA]
¢þ
>WENV182280319
OHUX01000634
[OHUX] human gut metagenome; feces
908
834
-
Ile
GAT
[ENA]
¢þ
>WENV182280318
OHUX01000556
[OHUX] human gut metagenome; feces
971
1047
+
Pro
GGG
[ENA]
¢þ
>WENV182280316
OHUX01000315
[OHUX] human gut metagenome; feces
1251
1326
+
Ala
TGC
[ENA]
¢þ
>WENV182280317
OHUX01000315
[OHUX] human gut metagenome; feces
1330
1406
+
Ile
GAT
[ENA]
¢þ
>WENV182280308
OHUX01000083
[OHUX] human gut metagenome; feces
1915
1990
+
His
GTG
[ENA]
¢þ
>WENV182280314
OHUX01000163
[OHUX] human gut metagenome; feces
1920
1995
+
Ala
GGC
[ENA]
¢þ
>WENV182280309
OHUX01000083
[OHUX] human gut metagenome; feces
2044
2117
+
Gln
TTG
[ENA]
¢þ
>WENV182280315
OHUX01000191
[OHUX] human gut metagenome; feces
2064
2140
+
Val
GAC
[ENA]
¢þ
>WENV182280312
OHUX01000159
[OHUX] human gut metagenome; feces
2104
2180
+
Pro
CGG
[ENA]
¢þ
>WENV182280313
OHUX01000159
[OHUX] human gut metagenome; feces
2184
2257
+
Gly
TCC
[ENA]
¢þ
>WENV182280294
OHUX01000017
[OHUX] human gut metagenome; feces
2614
2697
+
Leu
TAG
[ENA]
¢þ
>WENV182280304
OHUX01000065
[OHUX] human gut metagenome; feces
3148
3222
+
Gly
GCC
[ENA]
¢þ
>WENV182280305
OHUX01000065
[OHUX] human gut metagenome; feces
3258
3333
+
Asn
GTT
[ENA]
¢þ
>WENV182280306
OHUX01000065
[OHUX] human gut metagenome; feces
3336
3410
+
Gln
CTG
[ENA]
¢þ
>WENV182280307
OHUX01000065
[OHUX] human gut metagenome; feces
3415
3488
+
Lys
TTT
[ENA]
¢þ
>WENV182280296
OHUX01000035
[OHUX] human gut metagenome; feces
3937
4012
+
Thr
TGT
[ENA]
¢þ
>WENV182280297
OHUX01000035
[OHUX] human gut metagenome; feces
4016
4100
+
Tyr
GTA
[ENA]
¢þ
>WENV182280298
OHUX01000035
[OHUX] human gut metagenome; feces
4105
4180
+
fMet
CAT
[ENA]
¢þ
>WENV182280303
OHUX01000044
[OHUX] human gut metagenome; feces
4134
4061
-
Gly
TCC
[ENA]
¢þ
>WENV182280299
OHUX01000035
[OHUX] human gut metagenome; feces
4208
4283
+
Thr
GGT
[ENA]
¢þ
>WENV182280302
OHUX01000044
[OHUX] human gut metagenome; feces
4217
4143
-
Pro
TGG
[ENA]
¢þ
>WENV182280300
OHUX01000035
[OHUX] human gut metagenome; feces
4285
4361
+
Met
CAT
[ENA]
¢þ
>WENV182280301
OHUX01000037
[OHUX] human gut metagenome; feces
4457
4368
-
Ser
GCT
[ENA]
¢þ
>WENV182280293
OHUX01000004
[OHUX] human gut metagenome; feces
6420
6495
+
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK