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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHVG] human gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182282041
OHVG01000124
[OHVG] human gut metagenome; feces
28
102
+
Pro
TGG
[ENA]
¢þ
>WENV182282053
OHVG01000435
[OHVG] human gut metagenome; feces
105
21
-
Leu
TAA
[ENA]
¢þ
>WENV182282042
OHVG01000124
[OHVG] human gut metagenome; feces
108
178
+
Gly
TCC
[ENA]
¢þ
>WENV182282048
OHVG01000279
[OHVG] human gut metagenome; feces
137
64
-
Cys
GCA
[ENA]
¢þ
>WENV182282043
OHVG01000124
[OHVG] human gut metagenome; feces
199
274
+
Arg
TCT
[ENA]
¢þ
>WENV182282047
OHVG01000279
[OHVG] human gut metagenome; feces
247
172
-
Gly
GCC
[ENA]
¢þ
>WENV182282044
OHVG01000124
[OHVG] human gut metagenome; feces
279
353
+
His
GTG
[ENA]
¢þ
>WENV182282045
OHVG01000124
[OHVG] human gut metagenome; feces
360
433
+
Gln
TTG
[ENA]
¢þ
>WENV182282052
OHVG01000383
[OHVG] human gut metagenome; feces
363
290
-
Gly
GCC
[ENA]
¢þ
>WENV182282034
OHVG01000096
[OHVG] human gut metagenome; feces
385
460
+
Ala
TGC
[ENA]
¢þ
>WENV182282051
OHVG01000383
[OHVG] human gut metagenome; feces
437
367
-
Gly
TCC
[ENA]
¢þ
>WENV182282046
OHVG01000124
[OHVG] human gut metagenome; feces
449
523
+
Lys
TTT
[ENA]
¢þ
>WENV182282049
OHVG01000335
[OHVG] human gut metagenome; feces
457
383
-
Gln
TTG
[ENA]
¢þ
>WENV182282050
OHVG01000383
[OHVG] human gut metagenome; feces
521
445
-
Pro
TGG
[ENA]
¢þ
>WENV182282035
OHVG01000096
[OHVG] human gut metagenome; feces
546
618
+
Glu
TTC
[ENA]
¢þ
>WENV182282036
OHVG01000096
[OHVG] human gut metagenome; feces
653
725
+
Thr
TGT
[ENA]
¢þ
>WENV182282037
OHVG01000096
[OHVG] human gut metagenome; feces
729
804
+
Ile2
CAT
[ENA]
¢þ
>WENV182282038
OHVG01000096
[OHVG] human gut metagenome; feces
819
894
+
Asp
GTC
[ENA]
¢þ
>WENV182282040
OHVG01000115
[OHVG] human gut metagenome; feces
893
818
-
Arg
CCT
[ENA]
¢þ
>WENV182282039
OHVG01000096
[OHVG] human gut metagenome; feces
924
998
+
Val
TAC
[ENA]
¢þ
>WENV182282033
OHVG01000091
[OHVG] human gut metagenome; feces
932
856
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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