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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHWV] human gut metagenome; feces
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182303388
OHWV01001397
[OHWV] human gut metagenome; feces
28
103
+
Ala
GGC
[ENA]
¢þ
>WENV182303400
OHWV01002221
[OHWV] human gut metagenome; feces
54
129
+
Arg
TCT
[ENA]
¢þ
>WENV182303397
OHWV01002005
[OHWV] human gut metagenome; feces
145
62
-
Tyr
GTA
[ENA]
¢þ
>WENV182303392
OHWV01001670
[OHWV] human gut metagenome; feces
146
72
-
Glu
CTC
[ENA]
¢þ
>WENV182303398
OHWV01002067
[OHWV] human gut metagenome; feces
151
242
+
Ser
GGA
[ENA]
¢þ
>WENV182303393
OHWV01001969
[OHWV] human gut metagenome; feces
154
78
-
Asn
GTT
[ENA]
¢þ
>WENV182303401
OHWV01002221
[OHWV] human gut metagenome; feces
176
250
+
His
GTG
[ENA]
¢þ
>WENV182303386
OHWV01000483
[OHWV] human gut metagenome; feces
182
258
+
Arg
ACG
[ENA]
¢þ
>WENV182303399
OHWV01002093
[OHWV] human gut metagenome; feces
225
139
-
Leu
TAA
[ENA]
¢þ
>WENV182303391
OHWV01001521
[OHWV] human gut metagenome; feces
233
306
+
Gln
CTG
[ENA]
¢þ
>WENV182303396
OHWV01002005
[OHWV] human gut metagenome; feces
246
174
-
Thr
TGT
[ENA]
¢þ
>WENV182303387
OHWV01001372
[OHWV] human gut metagenome; feces
266
193
-
Arg
CCT
[ENA]
¢þ
>WENV182303402
OHWV01002221
[OHWV] human gut metagenome; feces
318
389
+
Gln
TTG
[ENA]
¢þ
>WENV182303395
OHWV01002005
[OHWV] human gut metagenome; feces
362
291
-
Glu
TTC
[ENA]
¢þ
>WENV182303403
OHWV01002221
[OHWV] human gut metagenome; feces
406
480
+
Lys
TTT
[ENA]
¢þ
>WENV182303390
OHWV01001484
[OHWV] human gut metagenome; feces
408
334
-
Cys
GCA
[ENA]
¢þ
>WENV182303394
OHWV01002005
[OHWV] human gut metagenome; feces
448
377
-
Asn
GTT
[ENA]
¢þ
>WENV182303389
OHWV01001484
[OHWV] human gut metagenome; feces
512
437
-
Gly
GCC
[ENA]
¢þ
>WENV182303384
OHWV01000065
[OHWV] human gut metagenome; feces
1017
941
-
Ile2
CAT
[ENA]
¢þ
>WENV182303385
OHWV01000086
[OHWV] human gut metagenome; feces
1064
978
-
Leu
AAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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