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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHWW] human gut metagenome; feces
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182303413
OHWW01000560
[OHWW] human gut metagenome; feces
151
76
-
Lys
CTT
[ENA]
¢þ
>WENV182303423
OHWW01001292
[OHWW] human gut metagenome; feces
172
98
-
Cys
GCA
[ENA]
¢þ
>WENV182303427
OHWW01001328
[OHWW] human gut metagenome; feces
189
115
-
Lys
TTT
[ENA]
¢þ
>WENV182303417
OHWW01000817
[OHWW] human gut metagenome; feces
208
122
-
Leu
AAG
[ENA]
¢þ
>WENV182303411
OHWW01000520
[OHWW] human gut metagenome; feces
223
148
-
Ala
GGC
[ENA]
¢þ
>WENV182303412
OHWW01000560
[OHWW] human gut metagenome; feces
229
155
-
Glu
CTC
[ENA]
¢þ
>WENV182303422
OHWW01001292
[OHWW] human gut metagenome; feces
276
201
-
Gly
GCC
[ENA]
¢þ
>WENV182303426
OHWW01001328
[OHWW] human gut metagenome; feces
277
206
-
Gln
TTG
[ENA]
¢þ
>WENV182303430
OHWW01001828
[OHWW] human gut metagenome; feces
282
358
+
fMet
CAT
[ENA]
¢þ
>WENV182303418
OHWW01001013
[OHWW] human gut metagenome; feces
294
221
-
Gln
CTG
[ENA]
¢þ
>WENV182303407
OHWW01000223
[OHWW] human gut metagenome; feces
314
389
+
Pro
TGG
[ENA]
¢þ
>WENV182303406
OHWW01000173
[OHWW] human gut metagenome; feces
336
422
+
Leu
CAG
[ENA]
¢þ
>WENV182303421
OHWW01001292
[OHWW] human gut metagenome; feces
355
280
-
Phe
GAA
[ENA]
¢þ
>WENV182303419
OHWW01001178
[OHWW] human gut metagenome; feces
396
467
+
Asn
GTT
[ENA]
¢þ
>WENV182303408
OHWW01000223
[OHWW] human gut metagenome; feces
408
479
+
Gly
TCC
[ENA]
¢þ
>WENV182303425
OHWW01001328
[OHWW] human gut metagenome; feces
419
345
-
His
GTG
[ENA]
¢þ
>WENV182303429
OHWW01001690
[OHWW] human gut metagenome; feces
419
495
+
Arg
CCG
[ENA]
¢þ
>WENV182303428
OHWW01001561
[OHWW] human gut metagenome; feces
438
363
-
Ala
CGC
[ENA]
¢þ
>WENV182303420
OHWW01001178
[OHWW] human gut metagenome; feces
471
544
+
Glu
TTC
[ENA]
¢þ
>WENV182303424
OHWW01001328
[OHWW] human gut metagenome; feces
541
466
-
Arg
TCT
[ENA]
¢þ
>WENV182303410
OHWW01000257
[OHWW] human gut metagenome; feces
571
497
-
Thr
TGT
[ENA]
¢þ
>WENV182303416
OHWW01000581
[OHWW] human gut metagenome; feces
584
509
-
Thr
GGT
[ENA]
¢þ
>WENV182303415
OHWW01000581
[OHWW] human gut metagenome; feces
664
588
-
Asp
GTC
[ENA]
¢þ
>WENV182303414
OHWW01000581
[OHWW] human gut metagenome; feces
744
669
-
Val
TAC
[ENA]
¢þ
>WENV182303409
OHWW01000256
[OHWW] human gut metagenome; feces
854
929
+
Trp
CCA
[ENA]
¢þ
>WENV182303405
OHWW01000029
[OHWW] human gut metagenome; feces
2195
2123
-
Ala
TGC
[ENA]
¢þ
>WENV182303404
OHWW01000028
[OHWW] human gut metagenome; feces
2401
2325
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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