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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHXO] human gut metagenome; feces
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182310917
OHXO01002800
[OHXO] human gut metagenome; feces
54
129
+
Val
TAC
[ENA]
¢þ
>WENV182310918
OHXO01002800
[OHXO] human gut metagenome; feces
135
211
+
Asp
GTC
[ENA]
¢þ
>WENV182310915
OHXO01002694
[OHXO] human gut metagenome; feces
156
82
-
Cys
GCA
[ENA]
¢þ
>WENV182310889
OHXO01000325
[OHXO] human gut metagenome; feces
182
255
+
Ala
TGC
[ENA]
¢þ
>WENV182310914
OHXO01002392
[OHXO] human gut metagenome; feces
214
139
-
Trp
CCA
[ENA]
¢þ
>WENV182310919
OHXO01002800
[OHXO] human gut metagenome; feces
216
291
+
Phe
GAA
[ENA]
¢þ
>WENV182310898
OHXO01000446
[OHXO] human gut metagenome; feces
243
318
+
Arg
CCT
[ENA]
¢þ
>WENV182310913
OHXO01002024
[OHXO] human gut metagenome; feces
244
158
-
Leu
TAA
[ENA]
¢þ
>WENV182310890
OHXO01000325
[OHXO] human gut metagenome; feces
277
352
+
Ile
GAT
[ENA]
¢þ
>WENV182310909
OHXO01001751
[OHXO] human gut metagenome; feces
279
352
+
Arg
CCG
[ENA]
¢þ
>WENV182310912
OHXO01002018
[OHXO] human gut metagenome; feces
296
221
-
Val
GAC
[ENA]
¢þ
>WENV182310920
OHXO01002800
[OHXO] human gut metagenome; feces
298
373
+
Gly
GCC
[ENA]
¢þ
>WENV182310900
OHXO01000871
[OHXO] human gut metagenome; feces
306
382
+
Met
CAT
[ENA]
¢þ
>WENV182310908
OHXO01001646
[OHXO] human gut metagenome; feces
340
428
+
Ser
CGA
[ENA]
¢þ
>WENV182310903
OHXO01000893
[OHXO] human gut metagenome; feces
344
419
+
Lys
CTT
[ENA]
¢þ
>WENV182310911
OHXO01001803
[OHXO] human gut metagenome; feces
369
293
-
Ile
GAT
[ENA]
¢þ
>WENV182310891
OHXO01000348
[OHXO] human gut metagenome; feces
370
445
+
Pro
TGG
[ENA]
¢þ
>WENV182310907
OHXO01001481
[OHXO] human gut metagenome; feces
372
296
-
Ile
GAT
[ENA]
¢þ
>WENV182310916
OHXO01002703
[OHXO] human gut metagenome; feces
407
332
-
Asn
GTT
[ENA]
¢þ
>WENV182310899
OHXO01000832
[OHXO] human gut metagenome; feces
412
340
-
Pro
TGG
[ENA]
¢þ
>WENV182310906
OHXO01001091
[OHXO] human gut metagenome; feces
443
354
-
Ser
GCT
[ENA]
¢þ
>WENV182310910
OHXO01001803
[OHXO] human gut metagenome; feces
448
373
-
Ala
TGC
[ENA]
¢þ
>WENV182310892
OHXO01000348
[OHXO] human gut metagenome; feces
451
522
+
Gly
TCC
[ENA]
¢þ
>WENV182310904
OHXO01000893
[OHXO] human gut metagenome; feces
478
552
+
Glu
CTC
[ENA]
¢þ
>WENV182310901
OHXO01000871
[OHXO] human gut metagenome; feces
508
580
+
Thr
TGT
[ENA]
¢þ
>WENV182310893
OHXO01000348
[OHXO] human gut metagenome; feces
549
622
+
Arg
TCT
[ENA]
¢þ
>WENV182310897
OHXO01000397
[OHXO] human gut metagenome; feces
577
653
+
Arg
CCT
[ENA]
¢þ
>WENV182310902
OHXO01000871
[OHXO] human gut metagenome; feces
584
659
+
Ile2
CAT
[ENA]
¢þ
>WENV182310905
OHXO01001091
[OHXO] human gut metagenome; feces
598
511
-
Ser
TGA
[ENA]
¢þ
>WENV182310894
OHXO01000348
[OHXO] human gut metagenome; feces
678
752
+
His
GTG
[ENA]
¢þ
>WENV182310895
OHXO01000348
[OHXO] human gut metagenome; feces
777
849
+
Gln
TTG
[ENA]
¢þ
>WENV182310888
OHXO01000319
[OHXO] human gut metagenome; feces
861
934
+
Gly
GCC
[ENA]
¢þ
>WENV182310896
OHXO01000348
[OHXO] human gut metagenome; feces
869
942
+
Lys
TTT
[ENA]
¢þ
>WENV182310887
OHXO01000061
[OHXO] human gut metagenome; feces
2159
2085
-
Ala
TGC
[ENA]
¢þ
>WENV182310886
OHXO01000061
[OHXO] human gut metagenome; feces
2250
2176
-
Ile
GAT
[ENA]
¢þ
>WENV182310885
OHXO01000058
[OHXO] human gut metagenome; feces
2368
2294
-
Met
CAT
[ENA]
¢þ
>WENV182310884
OHXO01000058
[OHXO] human gut metagenome; feces
2458
2384
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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