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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHXV] human gut metagenome; feces
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182312201
OHXV01003010
[OHXV] human gut metagenome; feces
165
75
-
Ser
GCT
[ENA]
¢þ
>WENV182312202
OHXV01003167
[OHXV] human gut metagenome; feces
166
90
-
Asn
GTT
[ENA]
¢þ
>WENV182312192
OHXV01001889
[OHXV] human gut metagenome; feces
190
265
+
Ala
TGC
[ENA]
¢þ
>WENV182312187
OHXV01001076
[OHXV] human gut metagenome; feces
211
137
-
Arg
CCT
[ENA]
¢þ
>WENV182312193
OHXV01001889
[OHXV] human gut metagenome; feces
269
345
+
Ile
GAT
[ENA]
¢þ
>WENV182312198
OHXV01002843
[OHXV] human gut metagenome; feces
280
354
+
Ile
GAT
[ENA]
¢þ
>WENV182312170
OHXV01000312
[OHXV] human gut metagenome; feces
287
212
-
Ala
CGC
[ENA]
¢þ
>WENV182312200
OHXV01003010
[OHXV] human gut metagenome; feces
298
208
-
Ser
TGA
[ENA]
¢þ
>WENV182312203
OHXV01003212
[OHXV] human gut metagenome; feces
299
384
+
Leu
TAA
[ENA]
¢þ
>WENV182312194
OHXV01002028
[OHXV] human gut metagenome; feces
300
375
+
Glu
TTC
[ENA]
¢þ
>WENV182312195
OHXV01002363
[OHXV] human gut metagenome; feces
306
231
-
Ala
GGC
[ENA]
¢þ
>WENV182312196
OHXV01002499
[OHXV] human gut metagenome; feces
323
236
-
Ser
TGA
[ENA]
¢þ
>WENV182312205
OHXV01003308
[OHXV] human gut metagenome; feces
326
237
-
Ser
GCT
[ENA]
¢þ
>WENV182312189
OHXV01001530
[OHXV] human gut metagenome; feces
356
429
+
Arg
TCT
[ENA]
¢þ
>WENV182312204
OHXV01003248
[OHXV] human gut metagenome; feces
358
433
+
Val
GAC
[ENA]
¢þ
>WENV182312188
OHXV01001302
[OHXV] human gut metagenome; feces
362
285
-
Asp
GTC
[ENA]
¢þ
>WENV182312178
OHXV01000455
[OHXV] human gut metagenome; feces
369
289
-
Leu
GAG
[ENA]
¢þ
>WENV182312199
OHXV01002843
[OHXV] human gut metagenome; feces
371
445
+
Ala
TGC
[ENA]
¢þ
>WENV182312174
OHXV01000389
[OHXV] human gut metagenome; feces
376
448
+
Thr
TGT
[ENA]
¢þ
>WENV182312183
OHXV01000606
[OHXV] human gut metagenome; feces
396
322
-
Gln
CTG
[ENA]
¢þ
>WENV182312197
OHXV01002723
[OHXV] human gut metagenome; feces
398
474
+
Arg
CCG
[ENA]
¢þ
>WENV182312190
OHXV01001530
[OHXV] human gut metagenome; feces
437
513
+
His
GTG
[ENA]
¢þ
>WENV182312185
OHXV01001064
[OHXV] human gut metagenome; feces
440
366
-
His
GTG
[ENA]
¢þ
>WENV182312182
OHXV01000594
[OHXV] human gut metagenome; feces
442
369
-
Gly
CCC
[ENA]
¢þ
>WENV182312184
OHXV01000832
[OHXV] human gut metagenome; feces
520
429
-
Ser
GGA
[ENA]
¢þ
>WENV182312191
OHXV01001530
[OHXV] human gut metagenome; feces
560
634
+
Gln
TTG
[ENA]
¢þ
>WENV182312175
OHXV01000389
[OHXV] human gut metagenome; feces
562
637
+
Asp
GTC
[ENA]
¢þ
>WENV182312186
OHXV01001072
[OHXV] human gut metagenome; feces
573
648
+
Trp
CCA
[ENA]
¢þ
>WENV182312181
OHXV01000594
[OHXV] human gut metagenome; feces
586
659
+
Gly
TCC
[ENA]
¢þ
>WENV182312173
OHXV01000381
[OHXV] human gut metagenome; feces
595
520
-
Gly
GCC
[ENA]
¢þ
>WENV182312176
OHXV01000389
[OHXV] human gut metagenome; feces
665
739
+
Val
TAC
[ENA]
¢þ
>WENV182312172
OHXV01000381
[OHXV] human gut metagenome; feces
677
602
-
Phe
GAA
[ENA]
¢þ
>WENV182312177
OHXV01000389
[OHXV] human gut metagenome; feces
742
826
+
Tyr
GTA
[ENA]
¢þ
>WENV182312179
OHXV01000472
[OHXV] human gut metagenome; feces
951
876
-
Pro
TGG
[ENA]
¢þ
>WENV182312180
OHXV01000549
[OHXV] human gut metagenome; feces
1008
1082
+
Arg
CCG
[ENA]
¢þ
>WENV182312171
OHXV01000338
[OHXV] human gut metagenome; feces
1124
1050
-
Thr
TGT
[ENA]
¢þ
>WENV182312169
OHXV01000042
[OHXV] human gut metagenome; feces
2278
2202
-
Ile
GAT
[ENA]
¢þ
>WENV182312168
OHXV01000042
[OHXV] human gut metagenome; feces
2378
2303
-
Ala
TGC
[ENA]
¢þ
>WENV182312167
OHXV01000024
[OHXV] human gut metagenome; feces
2760
2835
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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