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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OHZA] human gut metagenome; feces
HIT:
66 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182327579
OHZA01003397
[OHZA] human gut metagenome; feces
16
89
+
Ala
TGC
[ENA]
¢þ
>WENV182327586
OHZA01003970
[OHZA] human gut metagenome; feces
28
111
+
Leu
CAA
[ENA]
¢þ
>WENV182327561
OHZA01002470
[OHZA] human gut metagenome; feces
43
119
+
fMet
CAT
[ENA]
¢þ
>WENV182327570
OHZA01003086
[OHZA] human gut metagenome; feces
59
135
+
His
GTG
[ENA]
¢þ
>WENV182327542
OHZA01000762
[OHZA] human gut metagenome; feces
76
162
+
Leu
TAA
[ENA]
¢þ
>WENV182327562
OHZA01002516
[OHZA] human gut metagenome; feces
78
4
-
Asn
GTT
[ENA]
¢þ
>WENV182327554
OHZA01001317
[OHZA] human gut metagenome; feces
80
155
+
Thr
CGT
[ENA]
¢þ
>WENV182327580
OHZA01003397
[OHZA] human gut metagenome; feces
90
163
+
Ala
GGC
[ENA]
¢þ
>WENV182327595
OHZA01004725
[OHZA] human gut metagenome; feces
96
22
-
Asn
GTT
[ENA]
¢þ
>WENV182327588
OHZA01004216
[OHZA] human gut metagenome; feces
99
24
-
Phe
GAA
[ENA]
¢þ
>WENV182327594
OHZA01004652
[OHZA] human gut metagenome; feces
117
191
+
Met
CAT
[ENA]
¢þ
>WENV182327592
OHZA01004462
[OHZA] human gut metagenome; feces
120
194
+
Ile
GAT
[ENA]
¢þ
>WENV182327585
OHZA01003867
[OHZA] human gut metagenome; feces
133
59
-
Gly
CCC
[ENA]
¢þ
>WENV182327555
OHZA01001317
[OHZA] human gut metagenome; feces
178
251
+
Gly
CCC
[ENA]
¢þ
>WENV182327559
OHZA01002202
[OHZA] human gut metagenome; feces
189
114
-
Lys
TTT
[ENA]
¢þ
>WENV182327591
OHZA01004430
[OHZA] human gut metagenome; feces
205
280
+
Trp
CCA
[ENA]
¢þ
>WENV182327571
OHZA01003086
[OHZA] human gut metagenome; feces
208
282
+
Gln
TTG
[ENA]
¢þ
>WENV182327593
OHZA01004462
[OHZA] human gut metagenome; feces
212
286
+
Ala
TGC
[ENA]
¢þ
>WENV182327565
OHZA01002667
[OHZA] human gut metagenome; feces
233
162
-
Gln
CTG
[ENA]
¢þ
>WENV182327583
OHZA01003760
[OHZA] human gut metagenome; feces
240
168
-
Glu
CTC
[ENA]
¢þ
>WENV182327541
OHZA01000723
[OHZA] human gut metagenome; feces
240
324
+
Leu
GAG
[ENA]
¢þ
>WENV182327578
OHZA01003391
[OHZA] human gut metagenome; feces
275
361
+
Leu
CAA
[ENA]
¢þ
>WENV182327584
OHZA01003798
[OHZA] human gut metagenome; feces
286
206
-
Leu
TAA
[ENA]
¢þ
>WENV182327546
OHZA01000786
[OHZA] human gut metagenome; feces
296
223
-
Gly
TCC
[ENA]
¢þ
>WENV182327543
OHZA01000775
[OHZA] human gut metagenome; feces
301
375
+
Thr
TGT
[ENA]
¢þ
>WENV182327587
OHZA01004197
[OHZA] human gut metagenome; feces
314
228
-
Leu
TAA
[ENA]
¢þ
>WENV182327572
OHZA01003216
[OHZA] human gut metagenome; feces
352
439
+
Ser
TGA
[ENA]
¢þ
>WENV182327537
OHZA01000520
[OHZA] human gut metagenome; feces
353
264
-
Ser
CGA
[ENA]
¢þ
>WENV182327589
OHZA01004265
[OHZA] human gut metagenome; feces
359
433
+
Leu
CAA
[ENA]
¢þ
>WENV182327566
OHZA01002833
[OHZA] human gut metagenome; feces
364
291
-
Lys
TTT
[ENA]
¢þ
>WENV182327576
OHZA01003225
[OHZA] human gut metagenome; feces
383
310
-
Gly
GCC
[ENA]
¢þ
>WENV182327560
OHZA01002217
[OHZA] human gut metagenome; feces
392
468
+
Pro
CGG
[ENA]
¢þ
>WENV182327556
OHZA01001672
[OHZA] human gut metagenome; feces
401
327
-
Glu
TTC
[ENA]
¢þ
>WENV182327544
OHZA01000775
[OHZA] human gut metagenome; feces
404
486
+
Tyr
GTA
[ENA]
¢þ
>WENV182327569
OHZA01003048
[OHZA] human gut metagenome; feces
406
330
-
Ile
GAT
[ENA]
¢þ
>WENV182327581
OHZA01003438
[OHZA] human gut metagenome; feces
413
487
+
Val
GAC
[ENA]
¢þ
>WENV182327577
OHZA01003379
[OHZA] human gut metagenome; feces
422
348
-
Arg
CCG
[ENA]
¢þ
>WENV182327590
OHZA01004286
[OHZA] human gut metagenome; feces
448
524
+
Pro
CGG
[ENA]
¢þ
>WENV182327575
OHZA01003225
[OHZA] human gut metagenome; feces
457
387
-
Gly
TCC
[ENA]
¢þ
>WENV182327582
OHZA01003722
[OHZA] human gut metagenome; feces
466
391
-
Arg
TCT
[ENA]
¢þ
>WENV182327568
OHZA01003048
[OHZA] human gut metagenome; feces
486
411
-
Ala
GGC
[ENA]
¢þ
>WENV182327573
OHZA01003216
[OHZA] human gut metagenome; feces
508
598
+
Ser
GCT
[ENA]
¢þ
>WENV182327567
OHZA01002851
[OHZA] human gut metagenome; feces
514
441
-
Phe
GAA
[ENA]
¢þ
>WENV182327574
OHZA01003225
[OHZA] human gut metagenome; feces
538
463
-
Pro
TGG
[ENA]
¢þ
>WENV182327563
OHZA01002557
[OHZA] human gut metagenome; feces
547
621
+
Arg
CCT
[ENA]
¢þ
>WENV182327564
OHZA01002614
[OHZA] human gut metagenome; feces
557
477
-
Leu
TAG
[ENA]
¢þ
>WENV182327550
OHZA01000837
[OHZA] human gut metagenome; feces
569
640
+
Gln
TTG
[ENA]
¢þ
>WENV182327557
OHZA01001834
[OHZA] human gut metagenome; feces
578
649
+
Trp
CCA
[ENA]
¢þ
>WENV182327547
OHZA01000827
[OHZA] human gut metagenome; feces
578
652
+
Val
TAC
[ENA]
¢þ
>WENV182327545
OHZA01000775
[OHZA] human gut metagenome; feces
595
667
+
Thr
GGT
[ENA]
¢þ
>WENV182327552
OHZA01001190
[OHZA] human gut metagenome; feces
595
670
+
Val
TAC
[ENA]
¢þ
>WENV182327558
OHZA01002177
[OHZA] human gut metagenome; feces
604
679
+
Arg
TCT
[ENA]
¢þ
>WENV182327540
OHZA01000716
[OHZA] human gut metagenome; feces
657
730
+
Trp
CCA
[ENA]
¢þ
>WENV182327551
OHZA01000916
[OHZA] human gut metagenome; feces
658
729
+
Cys
GCA
[ENA]
¢þ
>WENV182327548
OHZA01000827
[OHZA] human gut metagenome; feces
660
742
+
Tyr
GTA
[ENA]
¢þ
>WENV182327549
OHZA01000827
[OHZA] human gut metagenome; feces
749
821
+
Thr
TGT
[ENA]
¢þ
>WENV182327533
OHZA01000099
[OHZA] human gut metagenome; feces
774
847
+
fMet
CAT
[ENA]
¢þ
>WENV182327553
OHZA01001289
[OHZA] human gut metagenome; feces
803
727
-
Ile
GAT
[ENA]
¢þ
>WENV182327539
OHZA01000618
[OHZA] human gut metagenome; feces
890
964
+
Pro
TGG
[ENA]
¢þ
>WENV182327536
OHZA01000306
[OHZA] human gut metagenome; feces
979
898
-
Leu
TAG
[ENA]
¢þ
>WENV182327531
OHZA01000025
[OHZA] human gut metagenome; feces
1044
1126
+
Leu
CAA
[ENA]
¢þ
>WENV182327535
OHZA01000306
[OHZA] human gut metagenome; feces
1147
1072
-
Thr
CGT
[ENA]
¢þ
>WENV182327538
OHZA01000544
[OHZA] human gut metagenome; feces
1160
1087
-
Phe
GAA
[ENA]
¢þ
>WENV182327534
OHZA01000249
[OHZA] human gut metagenome; feces
1469
1396
-
Ala
TGC
[ENA]
¢þ
>WENV182327530
OHZA01000024
[OHZA] human gut metagenome; feces
2104
2023
-
Leu
TAG
[ENA]
¢þ
>WENV182327532
OHZA01000038
[OHZA] human gut metagenome; feces
2300
2229
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK