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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OIAO] human gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182345587
OIAO01000009
[OIAO] human gut metagenome; feces
99
24
-
Lys
CTT
[ENA]
¢þ
>WENV182345593
OIAO01000156
[OIAO] human gut metagenome; feces
163
88
-
Ile2
CAT
[ENA]
¢þ
>WENV182345595
OIAO01000218
[OIAO] human gut metagenome; feces
233
159
-
Glu
CTC
[ENA]
¢þ
>WENV182345596
OIAO01000247
[OIAO] human gut metagenome; feces
311
398
+
Ser
TGA
[ENA]
¢þ
>WENV182345594
OIAO01000218
[OIAO] human gut metagenome; feces
367
292
-
Lys
CTT
[ENA]
¢þ
>WENV182345599
OIAO01000334
[OIAO] human gut metagenome; feces
368
295
-
Gly
GCC
[ENA]
¢þ
>WENV182345601
OIAO01000373
[OIAO] human gut metagenome; feces
409
334
-
Ala
TGC
[ENA]
¢þ
>WENV182345597
OIAO01000247
[OIAO] human gut metagenome; feces
431
519
+
Ser
GCT
[ENA]
¢þ
>WENV182345592
OIAO01000156
[OIAO] human gut metagenome; feces
435
359
-
Ala
GGC
[ENA]
¢þ
>WENV182345598
OIAO01000274
[OIAO] human gut metagenome; feces
482
557
+
Arg
CCT
[ENA]
¢þ
>WENV182345590
OIAO01000105
[OIAO] human gut metagenome; feces
510
583
+
Ala
TGC
[ENA]
¢þ
>WENV182345600
OIAO01000341
[OIAO] human gut metagenome; feces
558
486
-
Glu
CTC
[ENA]
¢þ
>WENV182345591
OIAO01000105
[OIAO] human gut metagenome; feces
587
661
+
Ile
GAT
[ENA]
¢þ
>WENV182345588
OIAO01000088
[OIAO] human gut metagenome; feces
828
903
+
fMet
CAT
[ENA]
¢þ
>WENV182345589
OIAO01000088
[OIAO] human gut metagenome; feces
907
980
+
Phe
GAA
[ENA]
¢þ
>WENV182345581
OIAO01000007
[OIAO] human gut metagenome; feces
3486
3559
+
Asp
GTC
[ENA]
¢þ
>WENV182345586
OIAO01000009
[OIAO] human gut metagenome; feces
3539
3465
-
Ala
TGC
[ENA]
¢þ
>WENV182345582
OIAO01000007
[OIAO] human gut metagenome; feces
3594
3668
+
Val
TAC
[ENA]
¢þ
>WENV182345583
OIAO01000007
[OIAO] human gut metagenome; feces
3672
3760
+
Leu
TAA
[ENA]
¢þ
>WENV182345584
OIAO01000007
[OIAO] human gut metagenome; feces
3894
3969
+
His
GTG
[ENA]
¢þ
>WENV182345585
OIAO01000007
[OIAO] human gut metagenome; feces
3972
4045
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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