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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OIAQ] human gut metagenome; feces
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182345634
OIAQ01001094
[OIAQ] human gut metagenome; feces
19
93
+
Arg
TCT
[ENA]
¢þ
>WENV182345626
OIAQ01000417
[OIAQ] human gut metagenome; feces
68
143
+
Gly
GCC
[ENA]
¢þ
>WENV182345621
OIAQ01000035
[OIAQ] human gut metagenome; feces
78
154
+
Ile
GAT
[ENA]
¢þ
>WENV182345635
OIAQ01001094
[OIAQ] human gut metagenome; feces
98
172
+
His
GTG
[ENA]
¢þ
>WENV182345624
OIAQ01000288
[OIAQ] human gut metagenome; feces
131
207
+
Ile2
CAT
[ENA]
¢þ
>WENV182345641
OIAQ01001665
[OIAQ] human gut metagenome; feces
163
88
-
Lys
CTT
[ENA]
¢þ
>WENV182345627
OIAQ01000417
[OIAQ] human gut metagenome; feces
173
247
+
Cys
GCA
[ENA]
¢þ
>WENV182345636
OIAQ01001094
[OIAQ] human gut metagenome; feces
197
272
+
Gln
TTG
[ENA]
¢þ
>WENV182345622
OIAQ01000035
[OIAQ] human gut metagenome; feces
198
273
+
Ala
TGC
[ENA]
¢þ
>WENV182345638
OIAQ01001408
[OIAQ] human gut metagenome; feces
260
346
+
Ser
TGA
[ENA]
¢þ
>WENV182345637
OIAQ01001094
[OIAQ] human gut metagenome; feces
280
354
+
Lys
TTT
[ENA]
¢þ
>WENV182345623
OIAQ01000079
[OIAQ] human gut metagenome; feces
297
372
+
Val
GAC
[ENA]
¢þ
>WENV182345642
OIAQ01001734
[OIAQ] human gut metagenome; feces
315
399
+
Tyr
GTA
[ENA]
¢þ
>WENV182345630
OIAQ01000753
[OIAQ] human gut metagenome; feces
335
261
-
Ala
TGC
[ENA]
¢þ
>WENV182345640
OIAQ01001495
[OIAQ] human gut metagenome; feces
363
438
+
Phe
GAA
[ENA]
¢þ
>WENV182345639
OIAQ01001408
[OIAQ] human gut metagenome; feces
393
484
+
Ser
GGA
[ENA]
¢þ
>WENV182345632
OIAQ01000980
[OIAQ] human gut metagenome; feces
399
473
+
Asn
GTT
[ENA]
¢þ
>WENV182345625
OIAQ01000303
[OIAQ] human gut metagenome; feces
411
335
-
Asp
GTC
[ENA]
¢þ
>WENV182345631
OIAQ01000755
[OIAQ] human gut metagenome; feces
463
373
-
Ser
CGA
[ENA]
¢þ
>WENV182345629
OIAQ01000753
[OIAQ] human gut metagenome; feces
499
425
-
Ile
GAT
[ENA]
¢þ
>WENV182345633
OIAQ01000980
[OIAQ] human gut metagenome; feces
517
589
+
Glu
TTC
[ENA]
¢þ
>WENV182345628
OIAQ01000623
[OIAQ] human gut metagenome; feces
521
446
-
Gly
GCC
[ENA]
¢þ
>WENV182345620
OIAQ01000003
[OIAQ] human gut metagenome; feces
13722
13646
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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