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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OIBZ] human gut metagenome; feces
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182359869
OIBZ01002919
[OIBZ] human gut metagenome; feces
115
41
-
Glu
CTC
[ENA]
¢þ
>WENV182359859
OIBZ01001058
[OIBZ] human gut metagenome; feces
117
193
+
Arg
ACG
[ENA]
¢þ
>WENV182359865
OIBZ01001326
[OIBZ] human gut metagenome; feces
139
65
-
Lys
TTT
[ENA]
¢þ
>WENV182359866
OIBZ01001916
[OIBZ] human gut metagenome; feces
204
128
-
Asp
GTC
[ENA]
¢þ
>WENV182359862
OIBZ01001252
[OIBZ] human gut metagenome; feces
218
146
-
Gln
CTG
[ENA]
¢þ
>WENV182359864
OIBZ01001326
[OIBZ] human gut metagenome; feces
231
159
-
Gln
TTG
[ENA]
¢þ
>WENV182359867
OIBZ01002553
[OIBZ] human gut metagenome; feces
232
159
-
Arg
CCG
[ENA]
¢þ
>WENV182359868
OIBZ01002660
[OIBZ] human gut metagenome; feces
261
336
+
Val
GAC
[ENA]
¢þ
>WENV182359861
OIBZ01001224
[OIBZ] human gut metagenome; feces
305
232
-
Gly
TCC
[ENA]
¢þ
>WENV182359863
OIBZ01001326
[OIBZ] human gut metagenome; feces
373
299
-
His
GTG
[ENA]
¢þ
>WENV182359860
OIBZ01001224
[OIBZ] human gut metagenome; feces
386
311
-
Pro
TGG
[ENA]
¢þ
>WENV182359853
OIBZ01000240
[OIBZ] human gut metagenome; feces
576
493
-
Tyr
GTA
[ENA]
¢þ
>WENV182359858
OIBZ01000430
[OIBZ] human gut metagenome; feces
606
533
-
Phe
GAA
[ENA]
¢þ
>WENV182359847
OIBZ01000151
[OIBZ] human gut metagenome; feces
659
734
+
Ile
GAT
[ENA]
¢þ
>WENV182359852
OIBZ01000240
[OIBZ] human gut metagenome; feces
677
605
-
Thr
TGT
[ENA]
¢þ
>WENV182359857
OIBZ01000430
[OIBZ] human gut metagenome; feces
702
628
-
fMet
CAT
[ENA]
¢þ
>WENV182359848
OIBZ01000151
[OIBZ] human gut metagenome; feces
740
815
+
Ala
TGC
[ENA]
¢þ
>WENV182359851
OIBZ01000240
[OIBZ] human gut metagenome; feces
776
702
-
Val
TAC
[ENA]
¢þ
>WENV182359856
OIBZ01000430
[OIBZ] human gut metagenome; feces
789
713
-
Ile2
CAT
[ENA]
¢þ
>WENV182359850
OIBZ01000240
[OIBZ] human gut metagenome; feces
879
804
-
Asp
GTC
[ENA]
¢þ
>WENV182359855
OIBZ01000430
[OIBZ] human gut metagenome; feces
894
818
-
Met
CAT
[ENA]
¢þ
>WENV182359854
OIBZ01000429
[OIBZ] human gut metagenome; feces
986
911
-
Lys
CTT
[ENA]
¢þ
>WENV182359849
OIBZ01000161
[OIBZ] human gut metagenome; feces
1284
1198
-
Leu
AAG
[ENA]
¢þ
>WENV182359846
OIBZ01000055
[OIBZ] human gut metagenome; feces
2191
2099
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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