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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OICO] human gut metagenome; feces
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182368977
OICO01000037
[OICO] human gut metagenome; feces
35
106
+
Gln
CTG
[ENA]
¢þ
>WENV182368976
OICO01000036
[OICO] human gut metagenome; feces
99
27
-
Glu
TTC
[ENA]
¢þ
>WENV182368968
OICO01000027
[OICO] human gut metagenome; feces
142
217
+
Asp
GTC
[ENA]
¢þ
>WENV182368980
OICO01000148
[OICO] human gut metagenome; feces
155
226
+
Asn
GTT
[ENA]
¢þ
>WENV182368975
OICO01000036
[OICO] human gut metagenome; feces
176
101
-
Asn
GTT
[ENA]
¢þ
>WENV182368981
OICO01000148
[OICO] human gut metagenome; feces
241
312
+
Glu
TTC
[ENA]
¢þ
>WENV182368969
OICO01000027
[OICO] human gut metagenome; feces
246
321
+
Val
TAC
[ENA]
¢þ
>WENV182368970
OICO01000027
[OICO] human gut metagenome; feces
327
403
+
Asp
GTC
[ENA]
¢þ
>WENV182368982
OICO01000148
[OICO] human gut metagenome; feces
357
429
+
Thr
TGT
[ENA]
¢þ
>WENV182368971
OICO01000027
[OICO] human gut metagenome; feces
410
485
+
Phe
GAA
[ENA]
¢þ
>WENV182368974
OICO01000036
[OICO] human gut metagenome; feces
443
369
-
Glu
CTC
[ENA]
¢þ
>WENV182368972
OICO01000027
[OICO] human gut metagenome; feces
493
568
+
Gly
GCC
[ENA]
¢þ
>WENV182368973
OICO01000036
[OICO] human gut metagenome; feces
577
502
-
Lys
CTT
[ENA]
¢þ
>WENV182368979
OICO01000114
[OICO] human gut metagenome; feces
596
521
-
Arg
CCT
[ENA]
¢þ
>WENV182368978
OICO01000053
[OICO] human gut metagenome; feces
1109
1181
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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