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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIDH] human gut metagenome; feces
HIT:
73 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182377675
OIDH01000074
[OIDH] human gut metagenome; feces
1
74
+
Arg
ACG
[ENA]
¢þ
>WENV182377717
OIDH01002551
[OIDH] human gut metagenome; feces
11
86
+
Ala
TGC
[ENA]
¢þ
>WENV182377727
OIDH01002981
[OIDH] human gut metagenome; feces
36
111
+
Thr
CGT
[ENA]
¢þ
>WENV182377711
OIDH01001943
[OIDH] human gut metagenome; feces
40
126
+
Leu
TAA
[ENA]
¢þ
>WENV182377735
OIDH01003758
[OIDH] human gut metagenome; feces
48
122
+
Lys
TTT
[ENA]
¢þ
>WENV182377709
OIDH01001607
[OIDH] human gut metagenome; feces
76
151
+
Lys
CTT
[ENA]
¢þ
>WENV182377690
OIDH01000635
[OIDH] human gut metagenome; feces
77
2
-
Val
TAC
[ENA]
¢þ
>WENV182377713
OIDH01002117
[OIDH] human gut metagenome; feces
90
178
+
Ser
GCT
[ENA]
¢þ
>WENV182377734
OIDH01003501
[OIDH] human gut metagenome; feces
93
19
-
Lys
CTT
[ENA]
¢þ
>WENV182377695
OIDH01000927
[OIDH] human gut metagenome; feces
95
168
+
Gly
CCC
[ENA]
¢þ
>WENV182377741
OIDH01004117
[OIDH] human gut metagenome; feces
96
21
-
Asn
GTT
[ENA]
¢þ
>WENV182377687
OIDH01000526
[OIDH] human gut metagenome; feces
101
177
+
Arg
TCT
[ENA]
¢þ
>WENV182377692
OIDH01000777
[OIDH] human gut metagenome; feces
105
17
-
Ser
GCT
[ENA]
¢þ
>WENV182377742
OIDH01004306
[OIDH] human gut metagenome; feces
118
208
+
Ser
GGA
[ENA]
¢þ
>WENV182377708
OIDH01001459
[OIDH] human gut metagenome; feces
124
50
-
Thr
TGT
[ENA]
¢þ
>WENV182377686
OIDH01000486
[OIDH] human gut metagenome; feces
128
201
+
Trp
CCA
[ENA]
¢þ
>WENV182377718
OIDH01002551
[OIDH] human gut metagenome; feces
136
210
+
Ile
GAT
[ENA]
¢þ
>WENV182377685
OIDH01000474
[OIDH] human gut metagenome; feces
158
231
+
Phe
GAA
[ENA]
¢þ
>WENV182377716
OIDH01002261
[OIDH] human gut metagenome; feces
164
93
-
Gln
CTG
[ENA]
¢þ
>WENV182377688
OIDH01000526
[OIDH] human gut metagenome; feces
187
263
+
His
GTG
[ENA]
¢þ
>WENV182377728
OIDH01002981
[OIDH] human gut metagenome; feces
204
285
+
Leu
TAG
[ENA]
¢þ
>WENV182377715
OIDH01002208
[OIDH] human gut metagenome; feces
218
146
-
Glu
CTC
[ENA]
¢þ
>WENV182377719
OIDH01002551
[OIDH] human gut metagenome; feces
252
325
+
Ala
TGC
[ENA]
¢þ
>WENV182377731
OIDH01003335
[OIDH] human gut metagenome; feces
252
332
+
Leu
TAG
[ENA]
¢þ
>WENV182377726
OIDH01002926
[OIDH] human gut metagenome; feces
254
342
+
Ser
GGA
[ENA]
¢þ
>WENV182377696
OIDH01000975
[OIDH] human gut metagenome; feces
295
222
-
Gly
TCC
[ENA]
¢þ
>WENV182377733
OIDH01003428
[OIDH] human gut metagenome; feces
295
369
+
Leu
CAA
[ENA]
¢þ
>WENV182377681
OIDH01000344
[OIDH] human gut metagenome; feces
299
228
-
Asn
GTT
[ENA]
¢þ
>WENV182377705
OIDH01001261
[OIDH] human gut metagenome; feces
300
225
-
Ala
CGC
[ENA]
¢þ
>WENV182377732
OIDH01003360
[OIDH] human gut metagenome; feces
307
381
+
Phe
GAA
[ENA]
¢þ
>WENV182377720
OIDH01002551
[OIDH] human gut metagenome; feces
326
399
+
Ala
GGC
[ENA]
¢þ
>WENV182377739
OIDH01004045
[OIDH] human gut metagenome; feces
333
409
+
His
GTG
[ENA]
¢þ
>WENV182377689
OIDH01000526
[OIDH] human gut metagenome; feces
336
410
+
Gln
TTG
[ENA]
¢þ
>WENV182377698
OIDH01001046
[OIDH] human gut metagenome; feces
338
412
+
Arg
ACG
[ENA]
¢þ
>WENV182377736
OIDH01003774
[OIDH] human gut metagenome; feces
348
423
+
Pro
TGG
[ENA]
¢þ
>WENV182377730
OIDH01003248
[OIDH] human gut metagenome; feces
364
291
-
Lys
TTT
[ENA]
¢þ
>WENV182377700
OIDH01001086
[OIDH] human gut metagenome; feces
380
290
-
Ser
GCT
[ENA]
¢þ
>WENV182377723
OIDH01002714
[OIDH] human gut metagenome; feces
400
328
-
Gln
CTG
[ENA]
¢þ
>WENV182377671
OIDH01000038
[OIDH] human gut metagenome; feces
403
478
+
Arg
ACG
[ENA]
¢þ
>WENV182377702
OIDH01001196
[OIDH] human gut metagenome; feces
413
486
+
Lys
CTT
[ENA]
¢þ
>WENV182377738
OIDH01003858
[OIDH] human gut metagenome; feces
425
350
-
Trp
CCA
[ENA]
¢þ
>WENV182377725
OIDH01002772
[OIDH] human gut metagenome; feces
426
352
-
Gln
CTG
[ENA]
¢þ
>WENV182377740
OIDH01004045
[OIDH] human gut metagenome; feces
432
507
+
Lys
CTT
[ENA]
¢þ
>WENV182377714
OIDH01002189
[OIDH] human gut metagenome; feces
439
353
-
Leu
AAG
[ENA]
¢þ
>WENV182377678
OIDH01000192
[OIDH] human gut metagenome; feces
450
376
-
Ile2
CAT
[ENA]
¢þ
>WENV182377704
OIDH01001247
[OIDH] human gut metagenome; feces
464
390
-
Met
CAT
[ENA]
¢þ
>WENV182377680
OIDH01000241
[OIDH] human gut metagenome; feces
465
394
-
Gln
TTG
[ENA]
¢þ
>WENV182377672
OIDH01000038
[OIDH] human gut metagenome; feces
485
558
+
Phe
GAA
[ENA]
¢þ
>WENV182377722
OIDH01002714
[OIDH] human gut metagenome; feces
494
408
-
Ser
TGA
[ENA]
¢þ
>WENV182377737
OIDH01003858
[OIDH] human gut metagenome; feces
504
429
-
Thr
GGT
[ENA]
¢þ
>WENV182377712
OIDH01001958
[OIDH] human gut metagenome; feces
519
435
-
Leu
GAG
[ENA]
¢þ
>WENV182377707
OIDH01001429
[OIDH] human gut metagenome; feces
530
441
-
Ser
CGA
[ENA]
¢þ
>WENV182377699
OIDH01001086
[OIDH] human gut metagenome; feces
536
449
-
Ser
TGA
[ENA]
¢þ
>WENV182377724
OIDH01002772
[OIDH] human gut metagenome; feces
537
464
-
Glu
CTC
[ENA]
¢þ
>WENV182377684
OIDH01000438
[OIDH] human gut metagenome; feces
543
461
-
Leu
CAA
[ENA]
¢þ
>WENV182377729
OIDH01003154
[OIDH] human gut metagenome; feces
561
486
-
Ala
TGC
[ENA]
¢þ
>WENV182377703
OIDH01001247
[OIDH] human gut metagenome; feces
568
494
-
Val
TAC
[ENA]
¢þ
>WENV182377721
OIDH01002714
[OIDH] human gut metagenome; feces
570
499
-
Gly
TCC
[ENA]
¢þ
>WENV182377693
OIDH01000781
[OIDH] human gut metagenome; feces
575
649
+
Ala
GGC
[ENA]
¢þ
>WENV182377706
OIDH01001389
[OIDH] human gut metagenome; feces
699
773
+
Asn
GTT
[ENA]
¢þ
>WENV182377710
OIDH01001869
[OIDH] human gut metagenome; feces
705
629
-
Arg
CCT
[ENA]
¢þ
>WENV182377694
OIDH01000870
[OIDH] human gut metagenome; feces
712
797
+
Ser
TGA
[ENA]
¢þ
>WENV182377683
OIDH01000437
[OIDH] human gut metagenome; feces
795
723
-
Thr
GGT
[ENA]
¢þ
>WENV182377697
OIDH01001043
[OIDH] human gut metagenome; feces
840
914
+
Phe
GAA
[ENA]
¢þ
>WENV182377701
OIDH01001125
[OIDH] human gut metagenome; feces
850
778
-
Glu
CTC
[ENA]
¢þ
>WENV182377679
OIDH01000213
[OIDH] human gut metagenome; feces
922
996
+
Pro
TGG
[ENA]
¢þ
>WENV182377682
OIDH01000437
[OIDH] human gut metagenome; feces
977
895
-
Tyr
GTA
[ENA]
¢þ
>WENV182377691
OIDH01000669
[OIDH] human gut metagenome; feces
1013
1087
+
Met
CAT
[ENA]
¢þ
>WENV182377676
OIDH01000114
[OIDH] human gut metagenome; feces
1350
1276
-
Arg
CCT
[ENA]
¢þ
>WENV182377670
OIDH01000033
[OIDH] human gut metagenome; feces
1382
1456
+
Asp
GTC
[ENA]
¢þ
>WENV182377677
OIDH01000151
[OIDH] human gut metagenome; feces
1590
1519
-
Gln
TTG
[ENA]
¢þ
>WENV182377674
OIDH01000046
[OIDH] human gut metagenome; feces
2122
2047
-
Ala
TGC
[ENA]
¢þ
>WENV182377673
OIDH01000046
[OIDH] human gut metagenome; feces
2214
2140
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK