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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIHJ] human gut metagenome; human gut
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182425137
OIHJ01003862
[OIHJ] human gut metagenome; human gut
111
26
-
Leu
TAA
[ENA]
¢þ
>WENV182425107
OIHJ01000118
[OIHJ] human gut metagenome; human gut
134
59
-
Val
TAC
[ENA]
¢þ
>WENV182425132
OIHJ01003859
[OIHJ] human gut metagenome; human gut
149
73
-
Pro
CGG
[ENA]
¢þ
>WENV182425108
OIHJ01000165
[OIHJ] human gut metagenome; human gut
153
59
-
SeC
TCA
[ENA]
¢þ
>WENV182425136
OIHJ01003862
[OIHJ] human gut metagenome; human gut
198
127
-
Gly
GCC
[ENA]
¢þ
>WENV182425106
OIHJ01000118
[OIHJ] human gut metagenome; human gut
245
170
-
Lys
TTT
[ENA]
¢þ
>WENV182425135
OIHJ01003862
[OIHJ] human gut metagenome; human gut
278
203
-
Thr
TGT
[ENA]
¢þ
>WENV182425134
OIHJ01003862
[OIHJ] human gut metagenome; human gut
379
296
-
Leu
TAG
[ENA]
¢þ
>WENV182425125
OIHJ01001374
[OIHJ] human gut metagenome; human gut
391
315
-
Arg
TCT
[ENA]
¢þ
>WENV182425131
OIHJ01003052
[OIHJ] human gut metagenome; human gut
432
348
-
Leu
CAA
[ENA]
¢þ
>WENV182425133
OIHJ01003862
[OIHJ] human gut metagenome; human gut
461
387
-
Lys
TTT
[ENA]
¢þ
>WENV182425118
OIHJ01000673
[OIHJ] human gut metagenome; human gut
464
389
-
Gly
GCC
[ENA]
¢þ
>WENV182425110
OIHJ01000231
[OIHJ] human gut metagenome; human gut
508
584
+
Arg
CCG
[ENA]
¢þ
>WENV182425130
OIHJ01001639
[OIHJ] human gut metagenome; human gut
525
451
-
Gln
CTG
[ENA]
¢þ
>WENV182425098
OIHJ01000004
[OIHJ] human gut metagenome; human gut
531
456
-
Trp
CCA
[ENA]
¢þ
>WENV182425115
OIHJ01000406
[OIHJ] human gut metagenome; human gut
584
508
-
fMet
CAT
[ENA]
¢þ
>WENV182425097
OIHJ01000004
[OIHJ] human gut metagenome; human gut
616
540
-
Asp
GTC
[ENA]
¢þ
>WENV182425111
OIHJ01000231
[OIHJ] human gut metagenome; human gut
643
718
+
His
GTG
[ENA]
¢þ
>WENV182425116
OIHJ01000408
[OIHJ] human gut metagenome; human gut
647
723
+
Val
GAC
[ENA]
¢þ
>WENV182425129
OIHJ01001639
[OIHJ] human gut metagenome; human gut
650
574
-
Met
CAT
[ENA]
¢þ
>WENV182425117
OIHJ01000408
[OIHJ] human gut metagenome; human gut
728
804
+
Val
GAC
[ENA]
¢þ
>WENV182425112
OIHJ01000231
[OIHJ] human gut metagenome; human gut
739
825
+
Leu
CAG
[ENA]
¢þ
>WENV182425128
OIHJ01001639
[OIHJ] human gut metagenome; human gut
740
666
-
Gln
TTG
[ENA]
¢þ
>WENV182425120
OIHJ01000852
[OIHJ] human gut metagenome; human gut
743
669
-
Arg
CCT
[ENA]
¢þ
>WENV182425126
OIHJ01001481
[OIHJ] human gut metagenome; human gut
812
737
-
Thr
CGT
[ENA]
¢þ
>WENV182425123
OIHJ01000989
[OIHJ] human gut metagenome; human gut
815
902
+
Ser
TGA
[ENA]
¢þ
>WENV182425119
OIHJ01000764
[OIHJ] human gut metagenome; human gut
818
904
+
Leu
GAG
[ENA]
¢þ
>WENV182425127
OIHJ01001639
[OIHJ] human gut metagenome; human gut
848
764
-
Leu
TAG
[ENA]
¢þ
>WENV182425113
OIHJ01000231
[OIHJ] human gut metagenome; human gut
868
944
+
Pro
TGG
[ENA]
¢þ
>WENV182425124
OIHJ01001332
[OIHJ] human gut metagenome; human gut
924
1000
+
Arg
TCG
[ENA]
¢þ
>WENV182425122
OIHJ01000885
[OIHJ] human gut metagenome; human gut
1094
1008
-
Leu
TAA
[ENA]
¢þ
>WENV182425121
OIHJ01000885
[OIHJ] human gut metagenome; human gut
1180
1107
-
Cys
GCA
[ENA]
¢þ
>WENV182425105
OIHJ01000067
[OIHJ] human gut metagenome; human gut
1356
1281
-
Thr
GGT
[ENA]
¢þ
>WENV182425104
OIHJ01000067
[OIHJ] human gut metagenome; human gut
1437
1363
-
Gly
TCC
[ENA]
¢þ
>WENV182425114
OIHJ01000265
[OIHJ] human gut metagenome; human gut
1599
1675
+
Pro
GGG
[ENA]
¢þ
>WENV182425103
OIHJ01000067
[OIHJ] human gut metagenome; human gut
1638
1554
-
Tyr
GTA
[ENA]
¢þ
>WENV182425102
OIHJ01000067
[OIHJ] human gut metagenome; human gut
1722
1647
-
Thr
TGT
[ENA]
¢þ
>WENV182425109
OIHJ01000196
[OIHJ] human gut metagenome; human gut
1881
1954
+
Gly
CCC
[ENA]
¢þ
>WENV182425101
OIHJ01000025
[OIHJ] human gut metagenome; human gut
2738
2813
+
Phe
GAA
[ENA]
¢þ
>WENV182425096
OIHJ01000004
[OIHJ] human gut metagenome; human gut
4054
3980
-
Glu
TTC
[ENA]
¢þ
>WENV182425095
OIHJ01000004
[OIHJ] human gut metagenome; human gut
4160
4070
-
Ser
GGA
[ENA]
¢þ
>WENV182425094
OIHJ01000004
[OIHJ] human gut metagenome; human gut
4277
4202
-
Asn
GTT
[ENA]
¢þ
>WENV182425099
OIHJ01000007
[OIHJ] human gut metagenome; human gut
5433
5509
+
Ile
GAT
[ENA]
¢þ
>WENV182425100
OIHJ01000007
[OIHJ] human gut metagenome; human gut
5551
5625
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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