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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OIHO] human gut metagenome; human gut
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182426197
OIHO01001882
[OIHO] human gut metagenome; human gut
125
201
+
Asp
GTC
[ENA]
¢þ
>WENV182426199
OIHO01001985
[OIHO] human gut metagenome; human gut
176
89
-
Ser
TGA
[ENA]
¢þ
>WENV182426198
OIHO01001882
[OIHO] human gut metagenome; human gut
210
285
+
Trp
CCA
[ENA]
¢þ
>WENV182426181
OIHO01000539
[OIHO] human gut metagenome; human gut
224
148
-
Val
GAC
[ENA]
¢þ
>WENV182426180
OIHO01000539
[OIHO] human gut metagenome; human gut
305
229
-
Val
GAC
[ENA]
¢þ
>WENV182426202
OIHO01002836
[OIHO] human gut metagenome; human gut
348
273
-
Met
CAT
[ENA]
¢þ
>WENV182426175
OIHO01000143
[OIHO] human gut metagenome; human gut
365
440
+
Phe
GAA
[ENA]
¢þ
>WENV182426193
OIHO01001699
[OIHO] human gut metagenome; human gut
372
448
+
Arg
CCG
[ENA]
¢þ
>WENV182426204
OIHO01002932
[OIHO] human gut metagenome; human gut
417
331
-
Leu
TAA
[ENA]
¢þ
>WENV182426188
OIHO01001441
[OIHO] human gut metagenome; human gut
465
554
+
Ser
CGA
[ENA]
¢þ
>WENV182426201
OIHO01002836
[OIHO] human gut metagenome; human gut
469
396
-
Pro
TGG
[ENA]
¢þ
>WENV182426203
OIHO01002932
[OIHO] human gut metagenome; human gut
503
430
-
Cys
GCA
[ENA]
¢þ
>WENV182426194
OIHO01001699
[OIHO] human gut metagenome; human gut
507
582
+
His
GTG
[ENA]
¢þ
>WENV182426186
OIHO01001046
[OIHO] human gut metagenome; human gut
515
609
+
SeC
TCA
[ENA]
¢þ
>WENV182426185
OIHO01000774
[OIHO] human gut metagenome; human gut
517
604
+
Ser
GGA
[ENA]
¢þ
>WENV182426200
OIHO01002836
[OIHO] human gut metagenome; human gut
554
480
-
Arg
ACG
[ENA]
¢þ
>WENV182426187
OIHO01001323
[OIHO] human gut metagenome; human gut
600
675
+
Ile2
CAT
[ENA]
¢þ
>WENV182426195
OIHO01001699
[OIHO] human gut metagenome; human gut
603
689
+
Leu
CAG
[ENA]
¢þ
>WENV182426192
OIHO01001581
[OIHO] human gut metagenome; human gut
668
592
-
Arg
TCT
[ENA]
¢þ
>WENV182426176
OIHO01000228
[OIHO] human gut metagenome; human gut
692
768
+
fMet
CAT
[ENA]
¢þ
>WENV182426196
OIHO01001699
[OIHO] human gut metagenome; human gut
718
804
+
Leu
CAG
[ENA]
¢þ
>WENV182426191
OIHO01001581
[OIHO] human gut metagenome; human gut
758
682
-
Arg
TCG
[ENA]
¢þ
>WENV182426174
OIHO01000134
[OIHO] human gut metagenome; human gut
806
882
+
Pro
CGG
[ENA]
¢þ
>WENV182426190
OIHO01001581
[OIHO] human gut metagenome; human gut
841
766
-
Ile2
CAT
[ENA]
¢þ
>WENV182426189
OIHO01001454
[OIHO] human gut metagenome; human gut
850
923
+
Gly
CCC
[ENA]
¢þ
>WENV182426184
OIHO01000730
[OIHO] human gut metagenome; human gut
868
943
+
Asn
GTT
[ENA]
¢þ
>WENV182426183
OIHO01000668
[OIHO] human gut metagenome; human gut
882
966
+
Leu
CAA
[ENA]
¢þ
>WENV182426182
OIHO01000647
[OIHO] human gut metagenome; human gut
1003
928
-
Asn
GTT
[ENA]
¢þ
>WENV182426177
OIHO01000338
[OIHO] human gut metagenome; human gut
1274
1360
+
Leu
GAG
[ENA]
¢þ
>WENV182426179
OIHO01000431
[OIHO] human gut metagenome; human gut
1517
1441
-
Pro
GGG
[ENA]
¢þ
>WENV182426178
OIHO01000404
[OIHO] human gut metagenome; human gut
1636
1561
-
Gly
GCC
[ENA]
¢þ
>WENV182426173
OIHO01000008
[OIHO] human gut metagenome; human gut
1731
1656
-
Thr
GGT
[ENA]
¢þ
>WENV182426172
OIHO01000008
[OIHO] human gut metagenome; human gut
1812
1738
-
Gly
TCC
[ENA]
¢þ
>WENV182426171
OIHO01000008
[OIHO] human gut metagenome; human gut
2013
1929
-
Tyr
GTA
[ENA]
¢þ
>WENV182426170
OIHO01000008
[OIHO] human gut metagenome; human gut
2097
2022
-
Thr
TGT
[ENA]
¢þ
>WENV182426169
OIHO01000007
[OIHO] human gut metagenome; human gut
3463
3388
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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