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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OIKK] human gut metagenome; human gut
HIT:
77 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182443205
OIKK01001802
[OIKK] human gut metagenome; human gut
1
75
+
Thr
TGT
[ENA]
¢þ
>WENV182443237
OIKK01008004
[OIKK] human gut metagenome; human gut
8
81
+
Lys
TTT
[ENA]
¢þ
>WENV182443239
OIKK01008799
[OIKK] human gut metagenome; human gut
8
83
+
Lys
TTT
[ENA]
¢þ
>WENV182443174
OIKK01000180
[OIKK] human gut metagenome; human gut
61
133
+
Ala
TGC
[ENA]
¢þ
>WENV182443220
OIKK01002875
[OIKK] human gut metagenome; human gut
76
4
-
Glu
TTC
[ENA]
¢þ
>WENV182443230
OIKK01005519
[OIKK] human gut metagenome; human gut
98
25
-
Ala
CGC
[ENA]
¢þ
>WENV182443232
OIKK01005651
[OIKK] human gut metagenome; human gut
108
34
-
Thr
TGT
[ENA]
¢þ
>WENV182443184
OIKK01000672
[OIKK] human gut metagenome; human gut
110
183
+
Phe
GAA
[ENA]
¢þ
>WENV182443206
OIKK01001802
[OIKK] human gut metagenome; human gut
118
201
+
Tyr
GTA
[ENA]
¢þ
>WENV182443207
OIKK01001857
[OIKK] human gut metagenome; human gut
130
202
+
Arg
CCT
[ENA]
¢þ
>WENV182443216
OIKK01002188
[OIKK] human gut metagenome; human gut
146
62
-
Leu
CAG
[ENA]
¢þ
>WENV182443210
OIKK01002041
[OIKK] human gut metagenome; human gut
155
69
-
Ser
TGA
[ENA]
¢þ
>WENV182443196
OIKK01001053
[OIKK] human gut metagenome; human gut
168
93
-
Thr
GGT
[ENA]
¢þ
>WENV182443241
OIKK01010034
[OIKK] human gut metagenome; human gut
171
97
-
Pro
TGG
[ENA]
¢þ
>WENV182443177
OIKK01000221
[OIKK] human gut metagenome; human gut
245
171
-
Arg
CCG
[ENA]
¢þ
>WENV182443234
OIKK01005806
[OIKK] human gut metagenome; human gut
258
334
+
His
GTG
[ENA]
¢þ
>WENV182443240
OIKK01009774
[OIKK] human gut metagenome; human gut
261
184
-
Arg
CCT
[ENA]
¢þ
>WENV182443236
OIKK01007916
[OIKK] human gut metagenome; human gut
281
354
+
Gln
CTG
[ENA]
¢þ
>WENV182443187
OIKK01000720
[OIKK] human gut metagenome; human gut
290
363
+
Gly
GCC
[ENA]
¢þ
>WENV182443194
OIKK01001044
[OIKK] human gut metagenome; human gut
381
454
+
Gln
CTG
[ENA]
¢þ
>WENV182443231
OIKK01005542
[OIKK] human gut metagenome; human gut
393
320
-
fMet
CAT
[ENA]
¢þ
>WENV182443223
OIKK01003949
[OIKK] human gut metagenome; human gut
400
307
-
Ser
GCT
[ENA]
¢þ
>WENV182443229
OIKK01005319
[OIKK] human gut metagenome; human gut
411
490
+
Leu
CAA
[ENA]
¢þ
>WENV182443173
OIKK01000164
[OIKK] human gut metagenome; human gut
416
492
+
Arg
ACG
[ENA]
¢þ
>WENV182443215
OIKK01002188
[OIKK] human gut metagenome; human gut
422
347
-
His
GTG
[ENA]
¢þ
>WENV182443208
OIKK01002040
[OIKK] human gut metagenome; human gut
445
528
+
Leu
GAG
[ENA]
¢þ
>WENV182443211
OIKK01002118
[OIKK] human gut metagenome; human gut
448
364
-
Leu
CAA
[ENA]
¢þ
>WENV182443242
OIKK01011210
[OIKK] human gut metagenome; human gut
463
392
-
Gln
TTG
[ENA]
¢þ
>WENV182443195
OIKK01001044
[OIKK] human gut metagenome; human gut
488
563
+
Pro
CGG
[ENA]
¢þ
>WENV182443233
OIKK01005792
[OIKK] human gut metagenome; human gut
491
566
+
Gly
CCC
[ENA]
¢þ
>WENV182443214
OIKK01002188
[OIKK] human gut metagenome; human gut
504
428
-
Arg
TCT
[ENA]
¢þ
>WENV182443222
OIKK01003949
[OIKK] human gut metagenome; human gut
521
434
-
Ser
TGA
[ENA]
¢þ
>WENV182443219
OIKK01002711
[OIKK] human gut metagenome; human gut
535
620
+
Tyr
GTA
[ENA]
¢þ
>WENV182443238
OIKK01008489
[OIKK] human gut metagenome; human gut
547
458
-
Ser
GGA
[ENA]
¢þ
>WENV182443227
OIKK01005081
[OIKK] human gut metagenome; human gut
572
647
+
fMet
CAT
[ENA]
¢þ
>WENV182443235
OIKK01006087
[OIKK] human gut metagenome; human gut
579
654
+
Pro
TGG
[ENA]
¢þ
>WENV182443190
OIKK01000779
[OIKK] human gut metagenome; human gut
615
689
+
Asn
GTT
[ENA]
¢þ
>WENV182443226
OIKK01004910
[OIKK] human gut metagenome; human gut
638
726
+
Ser
GGA
[ENA]
¢þ
>WENV182443224
OIKK01004411
[OIKK] human gut metagenome; human gut
640
715
+
Ile2
CAT
[ENA]
¢þ
>WENV182443228
OIKK01005081
[OIKK] human gut metagenome; human gut
652
726
+
Phe
GAA
[ENA]
¢þ
>WENV182443221
OIKK01003257
[OIKK] human gut metagenome; human gut
660
735
+
Gly
CCC
[ENA]
¢þ
>WENV182443202
OIKK01001490
[OIKK] human gut metagenome; human gut
680
594
-
Leu
AAG
[ENA]
¢þ
>WENV182443201
OIKK01001367
[OIKK] human gut metagenome; human gut
693
622
-
Gln
TTG
[ENA]
¢þ
>WENV182443186
OIKK01000703
[OIKK] human gut metagenome; human gut
699
629
-
Gly
TCC
[ENA]
¢þ
>WENV182443225
OIKK01004740
[OIKK] human gut metagenome; human gut
717
805
+
Ser
GGA
[ENA]
¢þ
>WENV182443200
OIKK01001358
[OIKK] human gut metagenome; human gut
736
810
+
Gly
TCC
[ENA]
¢þ
>WENV182443171
OIKK01000069
[OIKK] human gut metagenome; human gut
755
830
+
Ala
GGC
[ENA]
¢þ
>WENV182443197
OIKK01001184
[OIKK] human gut metagenome; human gut
767
852
+
Ser
TGA
[ENA]
¢þ
>WENV182443217
OIKK01002614
[OIKK] human gut metagenome; human gut
769
844
+
Trp
CCA
[ENA]
¢þ
>WENV182443185
OIKK01000703
[OIKK] human gut metagenome; human gut
798
726
-
Phe
GAA
[ENA]
¢þ
>WENV182443204
OIKK01001646
[OIKK] human gut metagenome; human gut
883
954
+
Gln
TTG
[ENA]
¢þ
>WENV182443212
OIKK01002130
[OIKK] human gut metagenome; human gut
931
1005
+
Glu
CTC
[ENA]
¢þ
>WENV182443183
OIKK01000483
[OIKK] human gut metagenome; human gut
954
1026
+
Gln
CTG
[ENA]
¢þ
>WENV182443209
OIKK01002040
[OIKK] human gut metagenome; human gut
969
888
-
Leu
TAG
[ENA]
¢þ
>WENV182443218
OIKK01002614
[OIKK] human gut metagenome; human gut
1021
1097
+
Asp
GTC
[ENA]
¢þ
>WENV182443198
OIKK01001283
[OIKK] human gut metagenome; human gut
1043
1117
+
Met
CAT
[ENA]
¢þ
>WENV182443213
OIKK01002130
[OIKK] human gut metagenome; human gut
1047
1123
+
Asn
GTT
[ENA]
¢þ
>WENV182443203
OIKK01001504
[OIKK] human gut metagenome; human gut
1318
1244
-
Lys
CTT
[ENA]
¢þ
>WENV182443166
OIKK01000009
[OIKK] human gut metagenome; human gut
1342
1416
+
Val
TAC
[ENA]
¢þ
>WENV182443167
OIKK01000009
[OIKK] human gut metagenome; human gut
1441
1513
+
Thr
TGT
[ENA]
¢þ
>WENV182443199
OIKK01001308
[OIKK] human gut metagenome; human gut
1506
1423
-
Leu
CAA
[ENA]
¢þ
>WENV182443192
OIKK01000833
[OIKK] human gut metagenome; human gut
1509
1421
-
Ser
GCT
[ENA]
¢þ
>WENV182443168
OIKK01000009
[OIKK] human gut metagenome; human gut
1542
1625
+
Tyr
GTA
[ENA]
¢þ
>WENV182443179
OIKK01000234
[OIKK] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182443178
OIKK01000234
[OIKK] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182443188
OIKK01000743
[OIKK] human gut metagenome; human gut
1735
1811
+
Met
CAT
[ENA]
¢þ
>WENV182443193
OIKK01000874
[OIKK] human gut metagenome; human gut
1777
1859
+
Leu
TAG
[ENA]
¢þ
>WENV182443189
OIKK01000743
[OIKK] human gut metagenome; human gut
1903
1977
+
Glu
TTC
[ENA]
¢þ
>WENV182443191
OIKK01000796
[OIKK] human gut metagenome; human gut
1978
1901
-
Ile
GAT
[ENA]
¢þ
>WENV182443182
OIKK01000240
[OIKK] human gut metagenome; human gut
2143
2069
-
Lys
TTT
[ENA]
¢þ
>WENV182443181
OIKK01000240
[OIKK] human gut metagenome; human gut
2231
2160
-
Gln
TTG
[ENA]
¢þ
>WENV182443180
OIKK01000240
[OIKK] human gut metagenome; human gut
2373
2299
-
His
GTG
[ENA]
¢þ
>WENV182443172
OIKK01000158
[OIKK] human gut metagenome; human gut
2907
2836
-
Thr
GGT
[ENA]
¢þ
>WENV182443175
OIKK01000180
[OIKK] human gut metagenome; human gut
3448
3520
+
Trp
CCA
[ENA]
¢þ
>WENV182443176
OIKK01000198
[OIKK] human gut metagenome; human gut
3471
3543
+
Glu
CTC
[ENA]
¢þ
>WENV182443170
OIKK01000053
[OIKK] human gut metagenome; human gut
4676
4592
-
Leu
TAA
[ENA]
¢þ
>WENV182443169
OIKK01000053
[OIKK] human gut metagenome; human gut
4763
4690
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK