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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OILB] human gut metagenome; human gut
HIT:
148 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182446710
OILB01000005
[OILB] human gut metagenome; human gut
4
78
+
Met
CAT
[ENA]
¢þ
>WENV182446850
OILB01006619
[OILB] human gut metagenome; human gut
6
80
+
Asp
GTC
[ENA]
¢þ
>WENV182446836
OILB01005092
[OILB] human gut metagenome; human gut
8
83
+
Lys
CTT
[ENA]
¢þ
>WENV182446822
OILB01003774
[OILB] human gut metagenome; human gut
11
87
+
Met
CAT
[ENA]
¢þ
>WENV182446817
OILB01002312
[OILB] human gut metagenome; human gut
58
133
+
Lys
CTT
[ENA]
¢þ
>WENV182446762
OILB01000231
[OILB] human gut metagenome; human gut
87
13
-
Arg
CCT
[ENA]
¢þ
>WENV182446765
OILB01000383
[OILB] human gut metagenome; human gut
92
167
+
Gly
GCC
[ENA]
¢þ
>WENV182446854
OILB01008789
[OILB] human gut metagenome; human gut
102
178
+
Val
GAC
[ENA]
¢þ
>WENV182446811
OILB01002111
[OILB] human gut metagenome; human gut
103
18
-
Tyr
GTA
[ENA]
¢þ
>WENV182446826
OILB01004199
[OILB] human gut metagenome; human gut
119
192
+
Gln
TTG
[ENA]
¢þ
>WENV182446851
OILB01006619
[OILB] human gut metagenome; human gut
119
205
+
Leu
TAA
[ENA]
¢þ
>WENV182446794
OILB01000901
[OILB] human gut metagenome; human gut
133
60
-
Glu
TTC
[ENA]
¢þ
>WENV182446832
OILB01004790
[OILB] human gut metagenome; human gut
137
67
-
Cys
GCA
[ENA]
¢þ
>WENV182446847
OILB01006245
[OILB] human gut metagenome; human gut
171
99
-
Cys
GCA
[ENA]
¢þ
>WENV182446823
OILB01003774
[OILB] human gut metagenome; human gut
179
253
+
Glu
TTC
[ENA]
¢þ
>WENV182446855
OILB01008789
[OILB] human gut metagenome; human gut
183
259
+
Val
GAC
[ENA]
¢þ
>WENV182446766
OILB01000383
[OILB] human gut metagenome; human gut
197
271
+
Cys
GCA
[ENA]
¢þ
>WENV182446853
OILB01007811
[OILB] human gut metagenome; human gut
201
126
-
Thr
CGT
[ENA]
¢þ
>WENV182446833
OILB01004866
[OILB] human gut metagenome; human gut
207
282
+
Ala
TGC
[ENA]
¢þ
>WENV182446714
OILB01000010
[OILB] human gut metagenome; human gut
216
143
-
Pro
CGG
[ENA]
¢þ
>WENV182446831
OILB01004790
[OILB] human gut metagenome; human gut
241
170
-
Glu
TTC
[ENA]
¢þ
>WENV182446750
OILB01000094
[OILB] human gut metagenome; human gut
244
170
-
Asp
GTC
[ENA]
¢þ
>WENV182446734
OILB01000035
[OILB] human gut metagenome; human gut
264
190
-
Cys
GCA
[ENA]
¢þ
>WENV182446834
OILB01004866
[OILB] human gut metagenome; human gut
286
362
+
Ile
GAT
[ENA]
¢þ
>WENV182446816
OILB01002300
[OILB] human gut metagenome; human gut
313
239
-
His
GTG
[ENA]
¢þ
>WENV182446849
OILB01006464
[OILB] human gut metagenome; human gut
327
399
+
Trp
CCA
[ENA]
¢þ
>WENV182446839
OILB01005333
[OILB] human gut metagenome; human gut
341
417
+
Pro
GGG
[ENA]
¢þ
>WENV182446824
OILB01003977
[OILB] human gut metagenome; human gut
350
422
+
Gln
CTG
[ENA]
¢þ
>WENV182446805
OILB01001482
[OILB] human gut metagenome; human gut
352
425
+
Lys
TTT
[ENA]
¢þ
>WENV182446837
OILB01005163
[OILB] human gut metagenome; human gut
362
288
-
Thr
GGT
[ENA]
¢þ
>WENV182446810
OILB01002111
[OILB] human gut metagenome; human gut
363
289
-
Thr
TGT
[ENA]
¢þ
>WENV182446830
OILB01004790
[OILB] human gut metagenome; human gut
365
293
-
Asn
GTT
[ENA]
¢þ
>WENV182446845
OILB01006175
[OILB] human gut metagenome; human gut
368
278
-
Ser
GCT
[ENA]
¢þ
>WENV182446773
OILB01000499
[OILB] human gut metagenome; human gut
375
445
+
Gly
TCC
[ENA]
¢þ
>WENV182446846
OILB01006216
[OILB] human gut metagenome; human gut
377
301
-
Arg
TCT
[ENA]
¢þ
>WENV182446835
OILB01004985
[OILB] human gut metagenome; human gut
395
320
-
Asn
GTT
[ENA]
¢þ
>WENV182446815
OILB01002300
[OILB] human gut metagenome; human gut
397
322
-
Arg
TCT
[ENA]
¢þ
>WENV182446713
OILB01000010
[OILB] human gut metagenome; human gut
397
472
+
Phe
GAA
[ENA]
¢þ
>WENV182446819
OILB01003267
[OILB] human gut metagenome; human gut
407
316
-
Ser
GGA
[ENA]
¢þ
>WENV182446791
OILB01000794
[OILB] human gut metagenome; human gut
429
338
-
Ser
GGA
[ENA]
¢þ
>WENV182446840
OILB01005879
[OILB] human gut metagenome; human gut
444
368
-
Pro
CGG
[ENA]
¢þ
>WENV182446842
OILB01005886
[OILB] human gut metagenome; human gut
455
379
-
Pro
TGG
[ENA]
¢þ
>WENV182446848
OILB01006420
[OILB] human gut metagenome; human gut
455
530
+
Ile2
CAT
[ENA]
¢þ
>WENV182446825
OILB01003977
[OILB] human gut metagenome; human gut
455
530
+
Pro
CGG
[ENA]
¢þ
>WENV182446782
OILB01000610
[OILB] human gut metagenome; human gut
464
540
+
Asn
GTT
[ENA]
¢þ
>WENV182446843
OILB01006092
[OILB] human gut metagenome; human gut
466
392
-
Arg
CCT
[ENA]
¢þ
>WENV182446774
OILB01000499
[OILB] human gut metagenome; human gut
484
559
+
Arg
TCT
[ENA]
¢þ
>WENV182446806
OILB01001482
[OILB] human gut metagenome; human gut
484
566
+
Leu
TAG
[ENA]
¢þ
>WENV182446852
OILB01007453
[OILB] human gut metagenome; human gut
497
411
-
Leu
CAA
[ENA]
¢þ
>WENV182446844
OILB01006175
[OILB] human gut metagenome; human gut
501
411
-
Ser
TGA
[ENA]
¢þ
>WENV182446818
OILB01003267
[OILB] human gut metagenome; human gut
501
414
-
Ser
TGA
[ENA]
¢þ
>WENV182446795
OILB01000922
[OILB] human gut metagenome; human gut
509
582
+
Asn
GTT
[ENA]
¢þ
>WENV182446828
OILB01004428
[OILB] human gut metagenome; human gut
522
427
-
SeC
TCA
[ENA]
¢þ
>WENV182446829
OILB01004599
[OILB] human gut metagenome; human gut
524
446
-
Arg
CCT
[ENA]
¢þ
>WENV182446838
OILB01005326
[OILB] human gut metagenome; human gut
549
636
+
Ser
TGA
[ENA]
¢þ
>WENV182446808
OILB01001687
[OILB] human gut metagenome; human gut
550
474
-
fMet
CAT
[ENA]
¢þ
>WENV182446775
OILB01000499
[OILB] human gut metagenome; human gut
564
643
+
His
GTG
[ENA]
¢þ
>WENV182446841
OILB01005886
[OILB] human gut metagenome; human gut
584
498
-
Leu
CAG
[ENA]
¢þ
>WENV182446827
OILB01004396
[OILB] human gut metagenome; human gut
609
696
+
Ser
GCT
[ENA]
¢þ
>WENV182446776
OILB01000499
[OILB] human gut metagenome; human gut
687
761
+
Gln
TTG
[ENA]
¢þ
>WENV182446821
OILB01003707
[OILB] human gut metagenome; human gut
702
777
+
Trp
CCA
[ENA]
¢þ
>WENV182446769
OILB01000433
[OILB] human gut metagenome; human gut
732
658
-
Gly
TCC
[ENA]
¢þ
>WENV182446786
OILB01000686
[OILB] human gut metagenome; human gut
766
841
+
Val
GAC
[ENA]
¢þ
>WENV182446761
OILB01000203
[OILB] human gut metagenome; human gut
824
753
-
Gln
TTG
[ENA]
¢þ
>WENV182446799
OILB01001129
[OILB] human gut metagenome; human gut
863
939
+
Val
CAC
[ENA]
¢þ
>WENV182446796
OILB01000922
[OILB] human gut metagenome; human gut
911
838
-
Ala
TGC
[ENA]
¢þ
>WENV182446820
OILB01003343
[OILB] human gut metagenome; human gut
935
848
-
Leu
TAA
[ENA]
¢þ
>WENV182446797
OILB01000989
[OILB] human gut metagenome; human gut
974
1049
+
Pro
TGG
[ENA]
¢þ
>WENV182446814
OILB01002273
[OILB] human gut metagenome; human gut
1074
1001
-
Gly
CCC
[ENA]
¢þ
>WENV182446813
OILB01002273
[OILB] human gut metagenome; human gut
1157
1081
-
Pro
TGG
[ENA]
¢þ
>WENV182446727
OILB01000029
[OILB] human gut metagenome; human gut
1180
1252
+
Glu
TTC
[ENA]
¢þ
>WENV182446809
OILB01001818
[OILB] human gut metagenome; human gut
1192
1279
+
Ser
GGA
[ENA]
¢þ
>WENV182446784
OILB01000614
[OILB] human gut metagenome; human gut
1202
1275
+
Gln
CTG
[ENA]
¢þ
>WENV182446798
OILB01001109
[OILB] human gut metagenome; human gut
1226
1151
-
Val
GAC
[ENA]
¢þ
>WENV182446812
OILB01002273
[OILB] human gut metagenome; human gut
1240
1164
-
Arg
ACG
[ENA]
¢þ
>WENV182446785
OILB01000614
[OILB] human gut metagenome; human gut
1304
1379
+
Pro
CGG
[ENA]
¢þ
>WENV182446807
OILB01001684
[OILB] human gut metagenome; human gut
1314
1398
+
Leu
CAA
[ENA]
¢þ
>WENV182446783
OILB01000613
[OILB] human gut metagenome; human gut
1339
1263
-
Arg
CCG
[ENA]
¢þ
>WENV182446751
OILB01000097
[OILB] human gut metagenome; human gut
1350
1277
-
Ile2
CAT
[ENA]
¢þ
>WENV182446790
OILB01000701
[OILB] human gut metagenome; human gut
1443
1368
-
Thr
GGT
[ENA]
¢þ
>WENV182446792
OILB01000824
[OILB] human gut metagenome; human gut
1461
1367
-
SeC
TCA
[ENA]
¢þ
>WENV182446802
OILB01001245
[OILB] human gut metagenome; human gut
1472
1548
+
Met
CAT
[ENA]
¢þ
>WENV182446757
OILB01000149
[OILB] human gut metagenome; human gut
1476
1400
-
Asn
GTT
[ENA]
¢þ
>WENV182446789
OILB01000701
[OILB] human gut metagenome; human gut
1524
1450
-
Gly
TCC
[ENA]
¢þ
>WENV182446803
OILB01001245
[OILB] human gut metagenome; human gut
1559
1643
+
Leu
TAG
[ENA]
¢þ
>WENV182446756
OILB01000149
[OILB] human gut metagenome; human gut
1592
1518
-
Glu
CTC
[ENA]
¢þ
>WENV182446804
OILB01001245
[OILB] human gut metagenome; human gut
1667
1741
+
Gln
TTG
[ENA]
¢þ
>WENV182446800
OILB01001189
[OILB] human gut metagenome; human gut
1673
1584
-
Ser
CGA
[ENA]
¢þ
>WENV182446801
OILB01001227
[OILB] human gut metagenome; human gut
1690
1774
+
Tyr
GTA
[ENA]
¢þ
>WENV182446788
OILB01000701
[OILB] human gut metagenome; human gut
1725
1641
-
Tyr
GTA
[ENA]
¢þ
>WENV182446780
OILB01000575
[OILB] human gut metagenome; human gut
1725
1800
+
Thr
CGT
[ENA]
¢þ
>WENV182446778
OILB01000527
[OILB] human gut metagenome; human gut
1806
1720
-
Leu
GAG
[ENA]
¢þ
>WENV182446787
OILB01000701
[OILB] human gut metagenome; human gut
1809
1734
-
Thr
TGT
[ENA]
¢þ
>WENV182446793
OILB01000865
[OILB] human gut metagenome; human gut
1860
1935
+
Trp
CCA
[ENA]
¢þ
>WENV182446771
OILB01000462
[OILB] human gut metagenome; human gut
2518
2600
+
Leu
GAG
[ENA]
¢þ
>WENV182446779
OILB01000551
[OILB] human gut metagenome; human gut
2567
2642
+
Phe
GAA
[ENA]
¢þ
>WENV182446777
OILB01000499
[OILB] human gut metagenome; human gut
2706
2632
-
Glu
CTC
[ENA]
¢þ
>WENV182446781
OILB01000597
[OILB] human gut metagenome; human gut
2720
2796
+
Arg
CCG
[ENA]
¢þ
>WENV182446772
OILB01000462
[OILB] human gut metagenome; human gut
2795
2714
-
Leu
TAG
[ENA]
¢þ
>WENV182446764
OILB01000313
[OILB] human gut metagenome; human gut
3042
2968
-
Ala
TGC
[ENA]
¢þ
>WENV182446763
OILB01000313
[OILB] human gut metagenome; human gut
3133
3059
-
Ile
GAT
[ENA]
¢þ
>WENV182446770
OILB01000436
[OILB] human gut metagenome; human gut
3294
3370
+
Arg
ACG
[ENA]
¢þ
>WENV182446768
OILB01000427
[OILB] human gut metagenome; human gut
3364
3289
-
Trp
CCA
[ENA]
¢þ
>WENV182446767
OILB01000427
[OILB] human gut metagenome; human gut
3449
3373
-
Asp
GTC
[ENA]
¢þ
>WENV182446744
OILB01000071
[OILB] human gut metagenome; human gut
3617
3527
-
Ser
CGA
[ENA]
¢þ
>WENV182446760
OILB01000196
[OILB] human gut metagenome; human gut
4278
4203
-
Gly
CCC
[ENA]
¢þ
>WENV182446758
OILB01000170
[OILB] human gut metagenome; human gut
6207
6293
+
Leu
CAG
[ENA]
¢þ
>WENV182446759
OILB01000181
[OILB] human gut metagenome; human gut
7166
7091
-
Ala
GGC
[ENA]
¢þ
>WENV182446747
OILB01000087
[OILB] human gut metagenome; human gut
7606
7681
+
His
GTG
[ENA]
¢þ
>WENV182446737
OILB01000039
[OILB] human gut metagenome; human gut
8043
7972
-
Gln
CTG
[ENA]
¢þ
>WENV182446723
OILB01000017
[OILB] human gut metagenome; human gut
8355
8443
+
Ser
GGA
[ENA]
¢þ
>WENV182446755
OILB01000140
[OILB] human gut metagenome; human gut
8942
8866
-
Val
TAC
[ENA]
¢þ
>WENV182446752
OILB01000099
[OILB] human gut metagenome; human gut
8970
8885
-
Ser
TGA
[ENA]
¢þ
>WENV182446754
OILB01000140
[OILB] human gut metagenome; human gut
9057
8981
-
Val
TAC
[ENA]
¢þ
>WENV182446745
OILB01000077
[OILB] human gut metagenome; human gut
10082
10157
+
Phe
GAA
[ENA]
¢þ
>WENV182446753
OILB01000102
[OILB] human gut metagenome; human gut
11430
11351
-
Leu
CAA
[ENA]
¢þ
>WENV182446724
OILB01000018
[OILB] human gut metagenome; human gut
13069
12987
-
Leu
TAG
[ENA]
¢þ
>WENV182446743
OILB01000063
[OILB] human gut metagenome; human gut
14483
14571
+
Ser
GGA
[ENA]
¢þ
>WENV182446748
OILB01000093
[OILB] human gut metagenome; human gut
15130
15217
+
Ser
TGA
[ENA]
¢þ
>WENV182446749
OILB01000093
[OILB] human gut metagenome; human gut
15251
15344
+
Ser
GCT
[ENA]
¢þ
>WENV182446726
OILB01000027
[OILB] human gut metagenome; human gut
15523
15448
-
Lys
TTT
[ENA]
¢þ
>WENV182446740
OILB01000046
[OILB] human gut metagenome; human gut
16585
16660
+
Pro
TGG
[ENA]
¢þ
>WENV182446725
OILB01000024
[OILB] human gut metagenome; human gut
18759
18833
+
Glu
TTC
[ENA]
¢þ
>WENV182446742
OILB01000048
[OILB] human gut metagenome; human gut
19641
19568
-
Gly
CCC
[ENA]
¢þ
>WENV182446717
OILB01000013
[OILB] human gut metagenome; human gut
21204
21278
+
Ile2
CAT
[ENA]
¢þ
>WENV182446746
OILB01000081
[OILB] human gut metagenome; human gut
21219
21293
+
Arg
TCT
[ENA]
¢þ
>WENV182446733
OILB01000031
[OILB] human gut metagenome; human gut
25283
25209
-
Asn
GTT
[ENA]
¢þ
>WENV182446732
OILB01000031
[OILB] human gut metagenome; human gut
25382
25308
-
Asn
GTT
[ENA]
¢þ
>WENV182446722
OILB01000016
[OILB] human gut metagenome; human gut
25807
25879
+
Arg
CCT
[ENA]
¢þ
>WENV182446711
OILB01000007
[OILB] human gut metagenome; human gut
26721
26650
-
Gln
TTG
[ENA]
¢þ
>WENV182446735
OILB01000037
[OILB] human gut metagenome; human gut
29459
29385
-
Thr
TGT
[ENA]
¢þ
>WENV182446728
OILB01000031
[OILB] human gut metagenome; human gut
38489
38563
+
Thr
TGT
[ENA]
¢þ
>WENV182446729
OILB01000031
[OILB] human gut metagenome; human gut
38606
38689
+
Tyr
GTA
[ENA]
¢þ
>WENV182446741
OILB01000047
[OILB] human gut metagenome; human gut
38671
38744
+
fMet
CAT
[ENA]
¢þ
>WENV182446730
OILB01000031
[OILB] human gut metagenome; human gut
38807
38879
+
Thr
GGT
[ENA]
¢þ
>WENV182446718
OILB01000015
[OILB] human gut metagenome; human gut
38973
39046
+
Lys
CTT
[ENA]
¢þ
>WENV182446719
OILB01000015
[OILB] human gut metagenome; human gut
39070
39143
+
Lys
CTT
[ENA]
¢þ
>WENV182446720
OILB01000015
[OILB] human gut metagenome; human gut
39163
39236
+
Lys
CTT
[ENA]
¢þ
>WENV182446731
OILB01000031
[OILB] human gut metagenome; human gut
40172
40245
+
Trp
CCA
[ENA]
¢þ
>WENV182446738
OILB01000042
[OILB] human gut metagenome; human gut
41319
41392
+
Gly
GCC
[ENA]
¢þ
>WENV182446739
OILB01000042
[OILB] human gut metagenome; human gut
41408
41493
+
Leu
TAA
[ENA]
¢þ
>WENV182446736
OILB01000039
[OILB] human gut metagenome; human gut
42868
42943
+
Pro
GGG
[ENA]
¢þ
>WENV182446716
OILB01000012
[OILB] human gut metagenome; human gut
74140
74067
-
Trp
CCA
[ENA]
¢þ
>WENV182446721
OILB01000015
[OILB] human gut metagenome; human gut
82496
82422
-
Ala
GGC
[ENA]
¢þ
>WENV182446715
OILB01000012
[OILB] human gut metagenome; human gut
87762
87847
+
Ser
TGA
[ENA]
¢þ
>WENV182446712
OILB01000008
[OILB] human gut metagenome; human gut
105684
105610
-
Glu
CTC
[ENA]
¢þ
>WENV182446708
OILB01000003
[OILB] human gut metagenome; human gut
158558
158486
-
Arg
CCG
[ENA]
¢þ
>WENV182446709
OILB01000004
[OILB] human gut metagenome; human gut
161581
161508
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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