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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OILF] human gut metagenome; human gut
HIT:
162 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182447544
OILF01007434
[OILF] human gut metagenome; human gut
6
80
+
Val
TAC
[ENA]
¢þ
>WENV182447560
OILF01010374
[OILF] human gut metagenome; human gut
6
82
+
Pro
GGG
[ENA]
¢þ
>WENV182447482
OILF01000742
[OILF] human gut metagenome; human gut
8
82
+
Ala
TGC
[ENA]
¢þ
>WENV182447566
OILF01011692
[OILF] human gut metagenome; human gut
27
100
+
Val
GAC
[ENA]
¢þ
>WENV182447551
OILF01008541
[OILF] human gut metagenome; human gut
66
137
+
Thr
TGT
[ENA]
¢þ
>WENV182447483
OILF01000752
[OILF] human gut metagenome; human gut
77
3
-
Ile2
CAT
[ENA]
¢þ
>WENV182447466
OILF01000397
[OILF] human gut metagenome; human gut
78
3
-
Val
TAC
[ENA]
¢þ
>WENV182447480
OILF01000706
[OILF] human gut metagenome; human gut
80
154
+
Asn
GTT
[ENA]
¢þ
>WENV182447540
OILF01006476
[OILF] human gut metagenome; human gut
80
166
+
Leu
CAG
[ENA]
¢þ
>WENV182447473
OILF01000522
[OILF] human gut metagenome; human gut
114
26
-
Ser
GGA
[ENA]
¢þ
>WENV182447545
OILF01007434
[OILF] human gut metagenome; human gut
117
191
+
Met
CAT
[ENA]
¢þ
>WENV182447563
OILF01011149
[OILF] human gut metagenome; human gut
133
218
+
Leu
CAA
[ENA]
¢þ
>WENV182447478
OILF01000640
[OILF] human gut metagenome; human gut
136
49
-
Ser
CGA
[ENA]
¢þ
>WENV182447533
OILF01005453
[OILF] human gut metagenome; human gut
140
212
+
Thr
GGT
[ENA]
¢þ
>WENV182447565
OILF01011561
[OILF] human gut metagenome; human gut
142
69
-
Pro
GGG
[ENA]
¢þ
>WENV182447562
OILF01010736
[OILF] human gut metagenome; human gut
149
73
-
Val
CAC
[ENA]
¢þ
>WENV182447500
OILF01001842
[OILF] human gut metagenome; human gut
153
78
-
Asp
GTC
[ENA]
¢þ
>WENV182447493
OILF01001581
[OILF] human gut metagenome; human gut
156
230
+
Lys
TTT
[ENA]
¢þ
>WENV182447548
OILF01007847
[OILF] human gut metagenome; human gut
166
81
-
Leu
AAG
[ENA]
¢þ
>WENV182447541
OILF01006476
[OILF] human gut metagenome; human gut
183
268
+
Leu
GAG
[ENA]
¢þ
>WENV182447468
OILF01000426
[OILF] human gut metagenome; human gut
199
126
-
fMet
CAT
[ENA]
¢þ
>WENV182447429
OILF01000075
[OILF] human gut metagenome; human gut
203
130
-
Thr
CGT
[ENA]
¢þ
>WENV182447547
OILF01007831
[OILF] human gut metagenome; human gut
206
123
-
Leu
CAG
[ENA]
¢þ
>WENV182447516
OILF01002790
[OILF] human gut metagenome; human gut
207
123
-
Leu
AAG
[ENA]
¢þ
>WENV182447558
OILF01009674
[OILF] human gut metagenome; human gut
219
146
-
Arg
CCG
[ENA]
¢þ
>WENV182447564
OILF01011476
[OILF] human gut metagenome; human gut
224
299
+
Asn
GTT
[ENA]
¢þ
>WENV182447499
OILF01001842
[OILF] human gut metagenome; human gut
232
157
-
Ile2
CAT
[ENA]
¢þ
>WENV182447511
OILF01002338
[OILF] human gut metagenome; human gut
232
305
+
Asn
GTT
[ENA]
¢þ
>WENV182447543
OILF01007223
[OILF] human gut metagenome; human gut
242
336
+
SeC
TCA
[ENA]
¢þ
>WENV182447485
OILF01000847
[OILF] human gut metagenome; human gut
261
186
-
Pro
GGG
[ENA]
¢þ
>WENV182447552
OILF01008541
[OILF] human gut metagenome; human gut
262
336
+
fMet
CAT
[ENA]
¢þ
>WENV182447561
OILF01010516
[OILF] human gut metagenome; human gut
267
339
+
Thr
CGT
[ENA]
¢þ
>WENV182447569
OILF01012215
[OILF] human gut metagenome; human gut
285
211
-
Arg
CCG
[ENA]
¢þ
>WENV182447535
OILF01005608
[OILF] human gut metagenome; human gut
287
214
-
Ala
CGC
[ENA]
¢þ
>WENV182447531
OILF01004569
[OILF] human gut metagenome; human gut
301
225
-
Pro
GGG
[ENA]
¢þ
>WENV182447520
OILF01003089
[OILF] human gut metagenome; human gut
306
379
+
Arg
CCT
[ENA]
¢þ
>WENV182447567
OILF01011740
[OILF] human gut metagenome; human gut
309
384
+
Thr
CGT
[ENA]
¢þ
>WENV182447554
OILF01008790
[OILF] human gut metagenome; human gut
314
238
-
Arg
ACG
[ENA]
¢þ
>WENV182447568
OILF01011969
[OILF] human gut metagenome; human gut
316
244
-
Trp
CCA
[ENA]
¢þ
>WENV182447498
OILF01001842
[OILF] human gut metagenome; human gut
332
260
-
Thr
TGT
[ENA]
¢þ
>WENV182447526
OILF01003706
[OILF] human gut metagenome; human gut
379
303
-
Arg
CCT
[ENA]
¢þ
>WENV182447534
OILF01005608
[OILF] human gut metagenome; human gut
383
309
-
Val
CAC
[ENA]
¢þ
>WENV182447525
OILF01003618
[OILF] human gut metagenome; human gut
385
475
+
Ser
GGA
[ENA]
¢þ
>WENV182447528
OILF01003947
[OILF] human gut metagenome; human gut
395
469
+
Ile
GAT
[ENA]
¢þ
>WENV182447479
OILF01000690
[OILF] human gut metagenome; human gut
405
331
-
Ala
GGC
[ENA]
¢þ
>WENV182447553
OILF01008790
[OILF] human gut metagenome; human gut
410
318
-
Ser
GCT
[ENA]
¢þ
>WENV182447521
OILF01003133
[OILF] human gut metagenome; human gut
424
500
+
Val
GAC
[ENA]
¢þ
>WENV182447532
OILF01005352
[OILF] human gut metagenome; human gut
451
375
-
Arg
CCG
[ENA]
¢þ
>WENV182447497
OILF01001842
[OILF] human gut metagenome; human gut
458
375
-
Tyr
GTA
[ENA]
¢þ
>WENV182447512
OILF01002338
[OILF] human gut metagenome; human gut
467
540
+
Glu
TTC
[ENA]
¢þ
>WENV182447507
OILF01002106
[OILF] human gut metagenome; human gut
498
585
+
Ser
TGA
[ENA]
¢þ
>WENV182447538
OILF01006270
[OILF] human gut metagenome; human gut
507
417
-
Ser
GCT
[ENA]
¢þ
>WENV182447522
OILF01003135
[OILF] human gut metagenome; human gut
533
458
-
Phe
GAA
[ENA]
¢þ
>WENV182447557
OILF01009481
[OILF] human gut metagenome; human gut
534
458
-
Val
GAC
[ENA]
¢þ
>WENV182447559
OILF01010179
[OILF] human gut metagenome; human gut
543
467
-
Ile
GAT
[ENA]
¢þ
>WENV182447518
OILF01003073
[OILF] human gut metagenome; human gut
546
617
+
Gln
CTG
[ENA]
¢þ
>WENV182447514
OILF01002493
[OILF] human gut metagenome; human gut
550
623
+
Lys
CTT
[ENA]
¢þ
>WENV182447539
OILF01006330
[OILF] human gut metagenome; human gut
553
641
+
Ser
CGA
[ENA]
¢þ
>WENV182447517
OILF01002825
[OILF] human gut metagenome; human gut
563
637
+
Phe
GAA
[ENA]
¢þ
>WENV182447527
OILF01003869
[OILF] human gut metagenome; human gut
566
493
-
Gln
TTG
[ENA]
¢þ
>WENV182447513
OILF01002338
[OILF] human gut metagenome; human gut
567
639
+
Cys
GCA
[ENA]
¢þ
>WENV182447555
OILF01009112
[OILF] human gut metagenome; human gut
578
501
-
Arg
CCG
[ENA]
¢þ
>WENV182447508
OILF01002106
[OILF] human gut metagenome; human gut
589
680
+
Ser
GGA
[ENA]
¢þ
>WENV182447515
OILF01002606
[OILF] human gut metagenome; human gut
593
669
+
Pro
CGG
[ENA]
¢þ
>WENV182447546
OILF01007632
[OILF] human gut metagenome; human gut
608
532
-
fMet
CAT
[ENA]
¢þ
>WENV182447556
OILF01009481
[OILF] human gut metagenome; human gut
615
539
-
Val
GAC
[ENA]
¢þ
>WENV182447549
OILF01007857
[OILF] human gut metagenome; human gut
616
540
-
Pro
TGG
[ENA]
¢þ
>WENV182447550
OILF01008517
[OILF] human gut metagenome; human gut
618
543
-
Asn
GTT
[ENA]
¢þ
>WENV182447465
OILF01000390
[OILF] human gut metagenome; human gut
635
559
-
Asp
GTC
[ENA]
¢þ
>WENV182447519
OILF01003073
[OILF] human gut metagenome; human gut
647
722
+
Pro
CGG
[ENA]
¢þ
>WENV182447542
OILF01006553
[OILF] human gut metagenome; human gut
659
577
-
Leu
TAG
[ENA]
¢þ
>WENV182447537
OILF01006020
[OILF] human gut metagenome; human gut
689
765
+
Arg
TCT
[ENA]
¢þ
>WENV182447495
OILF01001795
[OILF] human gut metagenome; human gut
693
765
+
Trp
CCA
[ENA]
¢þ
>WENV182447529
OILF01004013
[OILF] human gut metagenome; human gut
705
632
-
Lys
CTT
[ENA]
¢þ
>WENV182447490
OILF01001179
[OILF] human gut metagenome; human gut
753
839
+
Leu
CAG
[ENA]
¢þ
>WENV182447536
OILF01005683
[OILF] human gut metagenome; human gut
766
695
-
Glu
CTC
[ENA]
¢þ
>WENV182447524
OILF01003536
[OILF] human gut metagenome; human gut
811
722
-
Ser
CGA
[ENA]
¢þ
>WENV182447509
OILF01002152
[OILF] human gut metagenome; human gut
841
766
-
Lys
TTT
[ENA]
¢þ
>WENV182447530
OILF01004496
[OILF] human gut metagenome; human gut
856
782
-
Met
CAT
[ENA]
¢þ
>WENV182447523
OILF01003358
[OILF] human gut metagenome; human gut
873
947
+
Ala
CGC
[ENA]
¢þ
>WENV182447496
OILF01001823
[OILF] human gut metagenome; human gut
973
1057
+
Leu
CAG
[ENA]
¢þ
>WENV182447502
OILF01001944
[OILF] human gut metagenome; human gut
1011
1081
+
Gly
TCC
[ENA]
¢þ
>WENV182447506
OILF01001986
[OILF] human gut metagenome; human gut
1094
1180
+
Leu
TAA
[ENA]
¢þ
>WENV182447435
OILF01000099
[OILF] human gut metagenome; human gut
1117
1188
+
Gln
CTG
[ENA]
¢þ
>WENV182447503
OILF01001944
[OILF] human gut metagenome; human gut
1127
1202
+
Arg
TCT
[ENA]
¢þ
>WENV182447492
OILF01001293
[OILF] human gut metagenome; human gut
1130
1203
+
Gln
CTG
[ENA]
¢þ
>WENV182447510
OILF01002241
[OILF] human gut metagenome; human gut
1154
1080
-
Asn
GTT
[ENA]
¢þ
>WENV182447504
OILF01001944
[OILF] human gut metagenome; human gut
1207
1281
+
His
GTG
[ENA]
¢þ
>WENV182447477
OILF01000585
[OILF] human gut metagenome; human gut
1232
1158
-
Gly
CCC
[ENA]
¢þ
>WENV182447494
OILF01001603
[OILF] human gut metagenome; human gut
1241
1154
-
Ser
TGA
[ENA]
¢þ
>WENV182447501
OILF01001858
[OILF] human gut metagenome; human gut
1318
1246
-
Gln
CTG
[ENA]
¢þ
>WENV182447417
OILF01000014
[OILF] human gut metagenome; human gut
1321
1237
-
Leu
CAA
[ENA]
¢þ
>WENV182447505
OILF01001944
[OILF] human gut metagenome; human gut
1334
1405
+
Gln
TTG
[ENA]
¢þ
>WENV182447427
OILF01000061
[OILF] human gut metagenome; human gut
1679
1753
+
Ile2
CAT
[ENA]
¢þ
>WENV182447463
OILF01000360
[OILF] human gut metagenome; human gut
1855
1769
-
Ser
TGA
[ENA]
¢þ
>WENV182447489
OILF01001117
[OILF] human gut metagenome; human gut
1881
1805
-
Met
CAT
[ENA]
¢þ
>WENV182447491
OILF01001200
[OILF] human gut metagenome; human gut
1894
1819
-
Ala
CGC
[ENA]
¢þ
>WENV182447475
OILF01000543
[OILF] human gut metagenome; human gut
1950
1875
-
Pro
CGG
[ENA]
¢þ
>WENV182447440
OILF01000146
[OILF] human gut metagenome; human gut
1992
1919
-
Lys
TTT
[ENA]
¢þ
>WENV182447428
OILF01000063
[OILF] human gut metagenome; human gut
1999
1915
-
Leu
CAA
[ENA]
¢þ
>WENV182447488
OILF01001117
[OILF] human gut metagenome; human gut
2041
1966
-
fMet
CAT
[ENA]
¢þ
>WENV182447455
OILF01000289
[OILF] human gut metagenome; human gut
2158
2232
+
Thr
TGT
[ENA]
¢þ
>WENV182447472
OILF01000490
[OILF] human gut metagenome; human gut
2270
2197
-
Lys
CTT
[ENA]
¢þ
>WENV182447456
OILF01000289
[OILF] human gut metagenome; human gut
2348
2431
+
Tyr
GTA
[ENA]
¢þ
>WENV182447486
OILF01000881
[OILF] human gut metagenome; human gut
2368
2455
+
Ser
GCT
[ENA]
¢þ
>WENV182447487
OILF01000881
[OILF] human gut metagenome; human gut
2513
2585
+
Glu
CTC
[ENA]
¢þ
>WENV182447449
OILF01000234
[OILF] human gut metagenome; human gut
2629
2705
+
Asp
GTC
[ENA]
¢þ
>WENV182447476
OILF01000564
[OILF] human gut metagenome; human gut
2702
2631
-
Gln
TTG
[ENA]
¢þ
>WENV182447474
OILF01000543
[OILF] human gut metagenome; human gut
2798
2723
-
Pro
TGG
[ENA]
¢þ
>WENV182447484
OILF01000795
[OILF] human gut metagenome; human gut
2825
2897
+
Glu
CTC
[ENA]
¢þ
>WENV182447446
OILF01000197
[OILF] human gut metagenome; human gut
3001
2927
-
Ala
GGC
[ENA]
¢þ
>WENV182447460
OILF01000339
[OILF] human gut metagenome; human gut
3013
3101
+
Ser
GGA
[ENA]
¢þ
>WENV182447458
OILF01000314
[OILF] human gut metagenome; human gut
3058
3130
+
Arg
CCG
[ENA]
¢þ
>WENV182447481
OILF01000741
[OILF] human gut metagenome; human gut
3200
3274
+
Asn
GTT
[ENA]
¢þ
>WENV182447450
OILF01000234
[OILF] human gut metagenome; human gut
3200
3276
+
Asp
GTC
[ENA]
¢þ
>WENV182447459
OILF01000329
[OILF] human gut metagenome; human gut
3427
3500
+
Gly
GCC
[ENA]
¢þ
>WENV182447471
OILF01000474
[OILF] human gut metagenome; human gut
3462
3389
-
Lys
TTT
[ENA]
¢þ
>WENV182447410
OILF01000002
[OILF] human gut metagenome; human gut
3480
3552
+
Arg
CCT
[ENA]
¢þ
>WENV182447432
OILF01000081
[OILF] human gut metagenome; human gut
3543
3631
+
Leu
GAG
[ENA]
¢þ
>WENV182447438
OILF01000137
[OILF] human gut metagenome; human gut
3901
3829
-
Cys
GCA
[ENA]
¢þ
>WENV182447457
OILF01000289
[OILF] human gut metagenome; human gut
3965
4038
+
Trp
CCA
[ENA]
¢þ
>WENV182447467
OILF01000409
[OILF] human gut metagenome; human gut
3982
4056
+
Asp
GTC
[ENA]
¢þ
>WENV182447464
OILF01000390
[OILF] human gut metagenome; human gut
4073
3998
-
Glu
TTC
[ENA]
¢þ
>WENV182447469
OILF01000437
[OILF] human gut metagenome; human gut
4328
4403
+
Gly
GCC
[ENA]
¢þ
>WENV182447470
OILF01000451
[OILF] human gut metagenome; human gut
4429
4356
-
Thr
CGT
[ENA]
¢þ
>WENV182447443
OILF01000164
[OILF] human gut metagenome; human gut
4438
4526
+
Ser
GCT
[ENA]
¢þ
>WENV182447454
OILF01000268
[OILF] human gut metagenome; human gut
4575
4487
-
Ser
GGA
[ENA]
¢þ
>WENV182447442
OILF01000161
[OILF] human gut metagenome; human gut
5140
5217
+
Arg
TCT
[ENA]
¢þ
>WENV182447451
OILF01000238
[OILF] human gut metagenome; human gut
5193
5267
+
Asn
GTT
[ENA]
¢þ
>WENV182447462
OILF01000360
[OILF] human gut metagenome; human gut
5273
5345
+
Arg
CCT
[ENA]
¢þ
>WENV182447452
OILF01000238
[OILF] human gut metagenome; human gut
5402
5477
+
Val
TAC
[ENA]
¢þ
>WENV182447461
OILF01000353
[OILF] human gut metagenome; human gut
6193
6265
+
Gly
CCC
[ENA]
¢þ
>WENV182447445
OILF01000181
[OILF] human gut metagenome; human gut
6334
6406
+
Thr
GGT
[ENA]
¢þ
>WENV182447448
OILF01000218
[OILF] human gut metagenome; human gut
6366
6440
+
Met
CAT
[ENA]
¢þ
>WENV182447441
OILF01000151
[OILF] human gut metagenome; human gut
6460
6387
-
Lys
CTT
[ENA]
¢þ
>WENV182447439
OILF01000139
[OILF] human gut metagenome; human gut
6603
6675
+
Glu
TTC
[ENA]
¢þ
>WENV182447426
OILF01000047
[OILF] human gut metagenome; human gut
8329
8254
-
His
GTG
[ENA]
¢þ
>WENV182447453
OILF01000245
[OILF] human gut metagenome; human gut
8384
8311
-
Phe
GAA
[ENA]
¢þ
>WENV182447444
OILF01000180
[OILF] human gut metagenome; human gut
8972
9043
+
Cys
GCA
[ENA]
¢þ
>WENV182447447
OILF01000202
[OILF] human gut metagenome; human gut
10432
10505
+
fMet
CAT
[ENA]
¢þ
>WENV182447412
OILF01000008
[OILF] human gut metagenome; human gut
10589
10663
+
Arg
TCT
[ENA]
¢þ
>WENV182447437
OILF01000124
[OILF] human gut metagenome; human gut
11308
11223
-
Ser
TGA
[ENA]
¢þ
>WENV182447408
OILF01000001
[OILF] human gut metagenome; human gut
12075
12149
+
Sup
CTA
[ENA]
¢þ
>WENV182447434
OILF01000082
[OILF] human gut metagenome; human gut
12387
12315
-
Glu
TTC
[ENA]
¢þ
>WENV182447413
OILF01000009
[OILF] human gut metagenome; human gut
14352
14426
+
Thr
TGT
[ENA]
¢þ
>WENV182447414
OILF01000009
[OILF] human gut metagenome; human gut
14496
14579
+
Tyr
GTA
[ENA]
¢þ
>WENV182447415
OILF01000009
[OILF] human gut metagenome; human gut
14595
14667
+
Thr
GGT
[ENA]
¢þ
>WENV182447433
OILF01000082
[OILF] human gut metagenome; human gut
15883
15958
+
Pro
GGG
[ENA]
¢þ
>WENV182447416
OILF01000009
[OILF] human gut metagenome; human gut
15955
16028
+
Trp
CCA
[ENA]
¢þ
>WENV182447436
OILF01000102
[OILF] human gut metagenome; human gut
17877
17948
+
Gln
CTG
[ENA]
¢þ
>WENV182447430
OILF01000078
[OILF] human gut metagenome; human gut
19872
19945
+
Gly
GCC
[ENA]
¢þ
>WENV182447431
OILF01000078
[OILF] human gut metagenome; human gut
19961
20046
+
Leu
TAA
[ENA]
¢þ
>WENV182447425
OILF01000035
[OILF] human gut metagenome; human gut
22516
22433
-
Leu
TAG
[ENA]
¢þ
>WENV182447411
OILF01000007
[OILF] human gut metagenome; human gut
24063
23981
-
Leu
TAG
[ENA]
¢þ
>WENV182447421
OILF01000020
[OILF] human gut metagenome; human gut
26123
26196
+
Trp
CCA
[ENA]
¢þ
>WENV182447424
OILF01000027
[OILF] human gut metagenome; human gut
27861
27779
-
Leu
CAG
[ENA]
¢þ
>WENV182447422
OILF01000027
[OILF] human gut metagenome; human gut
30763
30837
+
Ile
GAT
[ENA]
¢þ
>WENV182447423
OILF01000027
[OILF] human gut metagenome; human gut
30847
30921
+
Ala
TGC
[ENA]
¢þ
>WENV182447420
OILF01000019
[OILF] human gut metagenome; human gut
31845
31930
+
Ser
TGA
[ENA]
¢þ
>WENV182447419
OILF01000016
[OILF] human gut metagenome; human gut
36684
36610
-
Thr
TGT
[ENA]
¢þ
>WENV182447418
OILF01000015
[OILF] human gut metagenome; human gut
37240
37157
-
Tyr
GTA
[ENA]
¢þ
>WENV182447409
OILF01000001
[OILF] human gut metagenome; human gut
83215
83143
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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