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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OILW] human gut metagenome; human gut
HIT:
163 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182450417
OILW01000640
[OILW] human gut metagenome; human gut
8
82
+
Ala
TGC
[ENA]
¢þ
>WENV182450467
OILW01004095
[OILW] human gut metagenome; human gut
32
103
+
Gln
TTG
[ENA]
¢þ
>WENV182450458
OILW01003102
[OILW] human gut metagenome; human gut
50
125
+
Ala
CGC
[ENA]
¢þ
>WENV182450427
OILW01000836
[OILW] human gut metagenome; human gut
51
125
+
Phe
GAA
[ENA]
¢þ
>WENV182450493
OILW01007045
[OILW] human gut metagenome; human gut
60
144
+
Leu
CAA
[ENA]
¢þ
>WENV182450412
OILW01000503
[OILW] human gut metagenome; human gut
80
154
+
Asn
GTT
[ENA]
¢þ
>WENV182450477
OILW01004902
[OILW] human gut metagenome; human gut
88
12
-
Arg
TCT
[ENA]
¢þ
>WENV182450450
OILW01002651
[OILW] human gut metagenome; human gut
105
16
-
Ser
GGA
[ENA]
¢þ
>WENV182450384
OILW01000138
[OILW] human gut metagenome; human gut
110
36
-
Ile2
CAT
[ENA]
¢þ
>WENV182450424
OILW01000801
[OILW] human gut metagenome; human gut
132
57
-
Ile2
CAT
[ENA]
¢þ
>WENV182450502
OILW01011057
[OILW] human gut metagenome; human gut
135
60
-
Thr
TGT
[ENA]
¢þ
>WENV182450393
OILW01000251
[OILW] human gut metagenome; human gut
142
70
-
Glu
CTC
[ENA]
¢þ
>WENV182450494
OILW01007230
[OILW] human gut metagenome; human gut
150
226
+
Met
CAT
[ENA]
¢þ
>WENV182450428
OILW01000836
[OILW] human gut metagenome; human gut
156
230
+
Lys
TTT
[ENA]
¢þ
>WENV182450499
OILW01008570
[OILW] human gut metagenome; human gut
158
75
-
Leu
GAG
[ENA]
¢þ
>WENV182450404
OILW01000327
[OILW] human gut metagenome; human gut
163
88
-
Val
TAC
[ENA]
¢þ
>WENV182450476
OILW01004902
[OILW] human gut metagenome; human gut
171
98
-
Gly
TCC
[ENA]
¢þ
>WENV182450504
OILW01012277
[OILW] human gut metagenome; human gut
182
255
+
Lys
TTT
[ENA]
¢þ
>WENV182450447
OILW01002079
[OILW] human gut metagenome; human gut
185
257
+
Ala
CGC
[ENA]
¢þ
>WENV182450484
OILW01006053
[OILW] human gut metagenome; human gut
197
272
+
Phe
GAA
[ENA]
¢þ
>WENV182450491
OILW01006605
[OILW] human gut metagenome; human gut
205
291
+
Leu
CAG
[ENA]
¢þ
>WENV182450376
OILW01000099
[OILW] human gut metagenome; human gut
211
140
-
Gln
CTG
[ENA]
¢þ
>WENV182450462
OILW01003352
[OILW] human gut metagenome; human gut
213
126
-
Ser
CGA
[ENA]
¢þ
>WENV182450459
OILW01003292
[OILW] human gut metagenome; human gut
229
304
+
Asp
GTC
[ENA]
¢þ
>WENV182450423
OILW01000801
[OILW] human gut metagenome; human gut
232
160
-
Thr
TGT
[ENA]
¢þ
>WENV182450394
OILW01000253
[OILW] human gut metagenome; human gut
234
146
-
Ser
GGA
[ENA]
¢þ
>WENV182450479
OILW01005490
[OILW] human gut metagenome; human gut
243
167
-
Pro
CGG
[ENA]
¢þ
>WENV182450488
OILW01006524
[OILW] human gut metagenome; human gut
257
186
-
Ile
TAT
[ENA]
¢þ
>WENV182450475
OILW01004902
[OILW] human gut metagenome; human gut
258
182
-
Pro
TGG
[ENA]
¢þ
>WENV182450495
OILW01007230
[OILW] human gut metagenome; human gut
275
349
+
Gln
CTG
[ENA]
¢þ
>WENV182450453
OILW01002731
[OILW] human gut metagenome; human gut
278
189
-
Ser
GGA
[ENA]
¢þ
>WENV182450392
OILW01000251
[OILW] human gut metagenome; human gut
287
200
-
Ser
GCT
[ENA]
¢þ
>WENV182450464
OILW01003991
[OILW] human gut metagenome; human gut
290
204
-
Leu
AAG
[ENA]
¢þ
>WENV182450391
OILW01000247
[OILW] human gut metagenome; human gut
297
222
-
Pro
CGG
[ENA]
¢þ
>WENV182450468
OILW01004609
[OILW] human gut metagenome; human gut
306
379
+
Arg
CCG
[ENA]
¢þ
>WENV182450492
OILW01006605
[OILW] human gut metagenome; human gut
308
393
+
Leu
GAG
[ENA]
¢þ
>WENV182450460
OILW01003292
[OILW] human gut metagenome; human gut
311
385
+
Val
TAC
[ENA]
¢þ
>WENV182450500
OILW01009033
[OILW] human gut metagenome; human gut
318
390
+
Thr
CGT
[ENA]
¢þ
>WENV182450478
OILW01005109
[OILW] human gut metagenome; human gut
331
258
-
Lys
CTT
[ENA]
¢þ
>WENV182450496
OILW01007279
[OILW] human gut metagenome; human gut
334
408
+
Arg
ACG
[ENA]
¢þ
>WENV182450474
OILW01004902
[OILW] human gut metagenome; human gut
352
277
-
Val
TAC
[ENA]
¢þ
>WENV182450501
OILW01009214
[OILW] human gut metagenome; human gut
353
270
-
Leu
CAG
[ENA]
¢þ
>WENV182450422
OILW01000801
[OILW] human gut metagenome; human gut
357
276
-
Tyr
GTA
[ENA]
¢þ
>WENV182450480
OILW01005900
[OILW] human gut metagenome; human gut
369
445
+
Asp
GTC
[ENA]
¢þ
>WENV182450490
OILW01006594
[OILW] human gut metagenome; human gut
371
455
+
Leu
CAA
[ENA]
¢þ
>WENV182450503
OILW01011889
[OILW] human gut metagenome; human gut
380
470
+
Ser
GCT
[ENA]
¢þ
>WENV182450432
OILW01001027
[OILW] human gut metagenome; human gut
392
465
+
Ile
GAT
[ENA]
¢þ
>WENV182450461
OILW01003292
[OILW] human gut metagenome; human gut
402
476
+
Met
CAT
[ENA]
¢þ
>WENV182450498
OILW01008270
[OILW] human gut metagenome; human gut
406
479
+
Gly
CCC
[ENA]
¢þ
>WENV182450452
OILW01002731
[OILW] human gut metagenome; human gut
428
342
-
Ser
TGA
[ENA]
¢þ
>WENV182450465
OILW01004013
[OILW] human gut metagenome; human gut
431
504
+
Gln
CTG
[ENA]
¢þ
>WENV182450473
OILW01004902
[OILW] human gut metagenome; human gut
435
361
-
Glu
TTC
[ENA]
¢þ
>WENV182450505
OILW01012470
[OILW] human gut metagenome; human gut
435
362
-
Gly
GCC
[ENA]
¢þ
>WENV182450451
OILW01002684
[OILW] human gut metagenome; human gut
437
513
+
Val
CAC
[ENA]
¢þ
>WENV182450421
OILW01000801
[OILW] human gut metagenome; human gut
444
371
-
Val
TAC
[ENA]
¢þ
>WENV182450481
OILW01005900
[OILW] human gut metagenome; human gut
448
523
+
Phe
GAA
[ENA]
¢þ
>WENV182450429
OILW01000951
[OILW] human gut metagenome; human gut
460
535
+
Thr
CGT
[ENA]
¢þ
>WENV182450442
OILW01001191
[OILW] human gut metagenome; human gut
468
395
-
Gly
GCC
[ENA]
¢þ
>WENV182450486
OILW01006079
[OILW] human gut metagenome; human gut
473
401
-
Cys
GCA
[ENA]
¢þ
>WENV182450435
OILW01001168
[OILW] human gut metagenome; human gut
481
555
+
Pro
TGG
[ENA]
¢þ
>WENV182450466
OILW01004092
[OILW] human gut metagenome; human gut
482
408
-
Glu
CTC
[ENA]
¢þ
>WENV182450455
OILW01002909
[OILW] human gut metagenome; human gut
505
430
-
Asn
GTT
[ENA]
¢þ
>WENV182450472
OILW01004902
[OILW] human gut metagenome; human gut
512
438
-
Asn
GTT
[ENA]
¢þ
>WENV182450487
OILW01006454
[OILW] human gut metagenome; human gut
518
447
-
Gly
GCC
[ENA]
¢þ
>WENV182450482
OILW01005900
[OILW] human gut metagenome; human gut
532
606
+
Gly
GCC
[ENA]
¢þ
>WENV182450407
OILW01000407
[OILW] human gut metagenome; human gut
546
458
-
Ser
GGA
[ENA]
¢þ
>WENV182450470
OILW01004772
[OILW] human gut metagenome; human gut
560
487
-
Cys
GCA
[ENA]
¢þ
>WENV182450436
OILW01001168
[OILW] human gut metagenome; human gut
564
634
+
Gly
TCC
[ENA]
¢þ
>WENV182450456
OILW01002975
[OILW] human gut metagenome; human gut
569
641
+
Thr
GGT
[ENA]
¢þ
>WENV182450489
OILW01006543
[OILW] human gut metagenome; human gut
573
647
+
Val
CAC
[ENA]
¢þ
>WENV182450446
OILW01001664
[OILW] human gut metagenome; human gut
575
650
+
Pro
GGG
[ENA]
¢þ
>WENV182450411
OILW01000491
[OILW] human gut metagenome; human gut
582
655
+
Lys
TTT
[ENA]
¢þ
>WENV182450483
OILW01005900
[OILW] human gut metagenome; human gut
614
689
+
Asn
GTT
[ENA]
¢þ
>WENV182450414
OILW01000560
[OILW] human gut metagenome; human gut
617
534
-
Leu
TAG
[ENA]
¢þ
>WENV182450497
OILW01007883
[OILW] human gut metagenome; human gut
617
541
-
Arg
TCT
[ENA]
¢þ
>WENV182450463
OILW01003355
[OILW] human gut metagenome; human gut
625
542
-
Leu
CAG
[ENA]
¢þ
>WENV182450485
OILW01006079
[OILW] human gut metagenome; human gut
634
563
-
Glu
TTC
[ENA]
¢þ
>WENV182450471
OILW01004815
[OILW] human gut metagenome; human gut
659
733
+
Ala
CGC
[ENA]
¢þ
>WENV182450425
OILW01000814
[OILW] human gut metagenome; human gut
678
607
-
Glu
CTC
[ENA]
¢þ
>WENV182450437
OILW01001168
[OILW] human gut metagenome; human gut
685
760
+
Arg
TCT
[ENA]
¢þ
>WENV182450469
OILW01004772
[OILW] human gut metagenome; human gut
690
615
-
Gly
GCC
[ENA]
¢þ
>WENV182450434
OILW01001144
[OILW] human gut metagenome; human gut
745
821
+
Arg
ACG
[ENA]
¢þ
>WENV182450438
OILW01001168
[OILW] human gut metagenome; human gut
765
839
+
His
GTG
[ENA]
¢þ
>WENV182450454
OILW01002878
[OILW] human gut metagenome; human gut
808
881
+
Gly
CCC
[ENA]
¢þ
>WENV182450448
OILW01002104
[OILW] human gut metagenome; human gut
821
893
+
Trp
CCA
[ENA]
¢þ
>WENV182450457
OILW01003021
[OILW] human gut metagenome; human gut
878
965
+
Ser
CGA
[ENA]
¢þ
>WENV182450439
OILW01001168
[OILW] human gut metagenome; human gut
892
963
+
Gln
TTG
[ENA]
¢þ
>WENV182450385
OILW01000181
[OILW] human gut metagenome; human gut
985
1067
+
Leu
CAG
[ENA]
¢þ
>WENV182450440
OILW01001168
[OILW] human gut metagenome; human gut
994
1067
+
Lys
TTT
[ENA]
¢þ
>WENV182450449
OILW01002624
[OILW] human gut metagenome; human gut
1007
1083
+
fMet
CAT
[ENA]
¢þ
>WENV182450443
OILW01001266
[OILW] human gut metagenome; human gut
1093
1164
+
Arg
CCG
[ENA]
¢þ
>WENV182450374
OILW01000086
[OILW] human gut metagenome; human gut
1118
1046
-
Thr
GGT
[ENA]
¢þ
>WENV182450390
OILW01000247
[OILW] human gut metagenome; human gut
1145
1070
-
Pro
TGG
[ENA]
¢þ
>WENV182450441
OILW01001168
[OILW] human gut metagenome; human gut
1205
1286
+
Leu
TAG
[ENA]
¢þ
>WENV182450445
OILW01001638
[OILW] human gut metagenome; human gut
1206
1135
-
Trp
CCA
[ENA]
¢þ
>WENV182450410
OILW01000445
[OILW] human gut metagenome; human gut
1288
1212
-
Asp
GTC
[ENA]
¢þ
>WENV182450409
OILW01000437
[OILW] human gut metagenome; human gut
1341
1414
+
Thr
CGT
[ENA]
¢þ
>WENV182450405
OILW01000338
[OILW] human gut metagenome; human gut
1354
1266
-
Ser
GCT
[ENA]
¢þ
>WENV182450430
OILW01001000
[OILW] human gut metagenome; human gut
1439
1523
+
Leu
CAA
[ENA]
¢þ
>WENV182450370
OILW01000061
[OILW] human gut metagenome; human gut
1447
1518
+
Cys
GCA
[ENA]
¢þ
>WENV182450444
OILW01001277
[OILW] human gut metagenome; human gut
1522
1447
-
Ala
GGC
[ENA]
¢þ
>WENV182450426
OILW01000816
[OILW] human gut metagenome; human gut
1581
1655
+
Met
CAT
[ENA]
¢þ
>WENV182450433
OILW01001048
[OILW] human gut metagenome; human gut
1590
1514
-
Pro
CGG
[ENA]
¢þ
>WENV182450353
OILW01000008
[OILW] human gut metagenome; human gut
1669
1752
+
Tyr
GTA
[ENA]
¢þ
>WENV182450431
OILW01001020
[OILW] human gut metagenome; human gut
1893
1966
+
Lys
CTT
[ENA]
¢þ
>WENV182450399
OILW01000289
[OILW] human gut metagenome; human gut
2020
2094
+
Asn
GTT
[ENA]
¢þ
>WENV182450398
OILW01000265
[OILW] human gut metagenome; human gut
2155
2083
-
Arg
CCT
[ENA]
¢þ
>WENV182450386
OILW01000200
[OILW] human gut metagenome; human gut
2198
2110
-
Leu
GAG
[ENA]
¢þ
>WENV182450400
OILW01000289
[OILW] human gut metagenome; human gut
2229
2304
+
Val
TAC
[ENA]
¢þ
>WENV182450420
OILW01000791
[OILW] human gut metagenome; human gut
2308
2236
-
Thr
CGT
[ENA]
¢þ
>WENV182450401
OILW01000301
[OILW] human gut metagenome; human gut
2332
2407
+
Gly
GCC
[ENA]
¢þ
>WENV182450419
OILW01000769
[OILW] human gut metagenome; human gut
2397
2484
+
Ser
GCT
[ENA]
¢þ
>WENV182450403
OILW01000322
[OILW] human gut metagenome; human gut
2595
2524
-
Gln
CTG
[ENA]
¢þ
>WENV182450396
OILW01000260
[OILW] human gut metagenome; human gut
2683
2610
-
Gly
GCC
[ENA]
¢þ
>WENV182450418
OILW01000735
[OILW] human gut metagenome; human gut
2684
2610
-
Asp
GTC
[ENA]
¢þ
>WENV182450402
OILW01000314
[OILW] human gut metagenome; human gut
2990
3065
+
Glu
TTC
[ENA]
¢þ
>WENV182450388
OILW01000220
[OILW] human gut metagenome; human gut
3093
3166
+
Phe
GAA
[ENA]
¢þ
>WENV182450416
OILW01000637
[OILW] human gut metagenome; human gut
3251
3325
+
Asn
GTT
[ENA]
¢þ
>WENV182450408
OILW01000419
[OILW] human gut metagenome; human gut
3304
3381
+
Arg
TCT
[ENA]
¢þ
>WENV182450415
OILW01000613
[OILW] human gut metagenome; human gut
3332
3405
+
Lys
CTT
[ENA]
¢þ
>WENV182450406
OILW01000405
[OILW] human gut metagenome; human gut
3450
3522
+
Arg
CCG
[ENA]
¢þ
>WENV182450363
OILW01000030
[OILW] human gut metagenome; human gut
3462
3389
-
Lys
TTT
[ENA]
¢þ
>WENV182450413
OILW01000538
[OILW] human gut metagenome; human gut
3838
3910
+
Glu
CTC
[ENA]
¢þ
>WENV182450381
OILW01000138
[OILW] human gut metagenome; human gut
3942
4016
+
Thr
TGT
[ENA]
¢þ
>WENV182450382
OILW01000138
[OILW] human gut metagenome; human gut
4132
4215
+
Tyr
GTA
[ENA]
¢þ
>WENV182450375
OILW01000089
[OILW] human gut metagenome; human gut
4605
4517
-
Ser
GGA
[ENA]
¢þ
>WENV182450373
OILW01000078
[OILW] human gut metagenome; human gut
5491
5416
-
Pro
GGG
[ENA]
¢þ
>WENV182450397
OILW01000265
[OILW] human gut metagenome; human gut
5573
5659
+
Ser
TGA
[ENA]
¢þ
>WENV182450383
OILW01000138
[OILW] human gut metagenome; human gut
5749
5822
+
Trp
CCA
[ENA]
¢þ
>WENV182450395
OILW01000260
[OILW] human gut metagenome; human gut
7224
7310
+
Leu
TAA
[ENA]
¢þ
>WENV182450387
OILW01000207
[OILW] human gut metagenome; human gut
7665
7739
+
Ala
GGC
[ENA]
¢þ
>WENV182450389
OILW01000233
[OILW] human gut metagenome; human gut
7937
8009
+
Gly
CCC
[ENA]
¢þ
>WENV182450372
OILW01000078
[OILW] human gut metagenome; human gut
8987
9059
+
Glu
TTC
[ENA]
¢þ
>WENV182450380
OILW01000113
[OILW] human gut metagenome; human gut
10021
10096
+
His
GTG
[ENA]
¢þ
>WENV182450360
OILW01000025
[OILW] human gut metagenome; human gut
11857
11931
+
Met
CAT
[ENA]
¢þ
>WENV182450377
OILW01000106
[OILW] human gut metagenome; human gut
13687
13761
+
Gly
CCC
[ENA]
¢þ
>WENV182450379
OILW01000109
[OILW] human gut metagenome; human gut
14083
14008
-
Pro
GGG
[ENA]
¢þ
>WENV182450371
OILW01000063
[OILW] human gut metagenome; human gut
14123
14050
-
fMet
CAT
[ENA]
¢þ
>WENV182450378
OILW01000107
[OILW] human gut metagenome; human gut
15210
15281
+
Gln
TTG
[ENA]
¢þ
>WENV182450357
OILW01000021
[OILW] human gut metagenome; human gut
17476
17550
+
Thr
TGT
[ENA]
¢þ
>WENV182450356
OILW01000017
[OILW] human gut metagenome; human gut
24796
24869
+
Lys
CTT
[ENA]
¢þ
>WENV182450358
OILW01000022
[OILW] human gut metagenome; human gut
25447
25521
+
Arg
TCT
[ENA]
¢þ
>WENV182450369
OILW01000056
[OILW] human gut metagenome; human gut
27522
27596
+
Ala
GGC
[ENA]
¢þ
>WENV182450368
OILW01000055
[OILW] human gut metagenome; human gut
28273
28346
+
Thr
CGT
[ENA]
¢þ
>WENV182450355
OILW01000014
[OILW] human gut metagenome; human gut
28530
28603
+
Trp
CCA
[ENA]
¢þ
>WENV182450367
OILW01000045
[OILW] human gut metagenome; human gut
31171
31097
-
Ile2
CAT
[ENA]
¢þ
>WENV182450366
OILW01000041
[OILW] human gut metagenome; human gut
31849
31934
+
Ser
TGA
[ENA]
¢þ
>WENV182450364
OILW01000038
[OILW] human gut metagenome; human gut
36438
36511
+
Gly
GCC
[ENA]
¢þ
>WENV182450365
OILW01000038
[OILW] human gut metagenome; human gut
36527
36612
+
Leu
TAA
[ENA]
¢þ
>WENV182450359
OILW01000024
[OILW] human gut metagenome; human gut
40688
40616
-
Cys
GCA
[ENA]
¢þ
>WENV182450352
OILW01000005
[OILW] human gut metagenome; human gut
44722
44649
-
Trp
CCA
[ENA]
¢þ
>WENV182450351
OILW01000005
[OILW] human gut metagenome; human gut
46082
46010
-
Thr
GGT
[ENA]
¢þ
>WENV182450350
OILW01000005
[OILW] human gut metagenome; human gut
46181
46098
-
Tyr
GTA
[ENA]
¢þ
>WENV182450349
OILW01000005
[OILW] human gut metagenome; human gut
46325
46251
-
Thr
TGT
[ENA]
¢þ
>WENV182450361
OILW01000025
[OILW] human gut metagenome; human gut
49880
49953
+
Phe
GAA
[ENA]
¢þ
>WENV182450362
OILW01000025
[OILW] human gut metagenome; human gut
49970
50043
+
Pro
CGG
[ENA]
¢þ
>WENV182450347
OILW01000004
[OILW] human gut metagenome; human gut
52310
52238
-
fMet
CAT
[ENA]
¢þ
>WENV182450354
OILW01000012
[OILW] human gut metagenome; human gut
68426
68499
+
fMet
CAT
[ENA]
¢þ
>WENV182450348
OILW01000005
[OILW] human gut metagenome; human gut
68993
68909
-
Leu
CAA
[ENA]
¢þ
>WENV182450344
OILW01000001
[OILW] human gut metagenome; human gut
69147
69075
-
Glu
TTC
[ENA]
¢þ
>WENV182450346
OILW01000004
[OILW] human gut metagenome; human gut
77178
77252
+
Sup
CTA
[ENA]
¢þ
>WENV182450345
OILW01000002
[OILW] human gut metagenome; human gut
80024
79952
-
Arg
CCT
[ENA]
¢þ
>WENV182450343
OILW01000001
[OILW] human gut metagenome; human gut
140245
140163
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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