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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OIMH] human gut metagenome; human gut
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182453155
OIMH01005704
[OIMH] human gut metagenome; human gut
63
137
+
Arg
ACG
[ENA]
¢þ
>WENV182453148
OIMH01004908
[OIMH] human gut metagenome; human gut
86
170
+
Tyr
GTA
[ENA]
¢þ
>WENV182453156
OIMH01005704
[OIMH] human gut metagenome; human gut
142
215
+
Phe
GAA
[ENA]
¢þ
>WENV182453137
OIMH01001392
[OIMH] human gut metagenome; human gut
166
94
-
Glu
CTC
[ENA]
¢þ
>WENV182453151
OIMH01005068
[OIMH] human gut metagenome; human gut
187
112
-
Pro
GGG
[ENA]
¢þ
>WENV182453132
OIMH01000987
[OIMH] human gut metagenome; human gut
196
124
-
Glu
TTC
[ENA]
¢þ
>WENV182453157
OIMH01005704
[OIMH] human gut metagenome; human gut
225
299
+
His
GTG
[ENA]
¢þ
>WENV182453138
OIMH01001489
[OIMH] human gut metagenome; human gut
257
342
+
Ser
TGA
[ENA]
¢þ
>WENV182453142
OIMH01003390
[OIMH] human gut metagenome; human gut
266
339
+
fMet
CAT
[ENA]
¢þ
>WENV182453149
OIMH01004908
[OIMH] human gut metagenome; human gut
287
361
+
Gly
TCC
[ENA]
¢þ
>WENV182453152
OIMH01005116
[OIMH] human gut metagenome; human gut
289
217
-
Arg
CCT
[ENA]
¢þ
>WENV182453136
OIMH01001392
[OIMH] human gut metagenome; human gut
331
244
-
Ser
GCT
[ENA]
¢þ
>WENV182453150
OIMH01004908
[OIMH] human gut metagenome; human gut
368
443
+
Thr
GGT
[ENA]
¢þ
>WENV182453145
OIMH01003774
[OIMH] human gut metagenome; human gut
388
304
-
Leu
CAA
[ENA]
¢þ
>WENV182453139
OIMH01002255
[OIMH] human gut metagenome; human gut
406
480
+
Ile2
CAT
[ENA]
¢þ
>WENV182453153
OIMH01005254
[OIMH] human gut metagenome; human gut
425
498
+
Gly
CCC
[ENA]
¢þ
>WENV182453154
OIMH01005328
[OIMH] human gut metagenome; human gut
428
503
+
Thr
GGT
[ENA]
¢þ
>WENV182453141
OIMH01002793
[OIMH] human gut metagenome; human gut
438
511
+
Glu
TTC
[ENA]
¢þ
>WENV182453147
OIMH01004445
[OIMH] human gut metagenome; human gut
461
386
-
His
GTG
[ENA]
¢þ
>WENV182453123
OIMH01000275
[OIMH] human gut metagenome; human gut
468
550
+
Leu
TAG
[ENA]
¢þ
>WENV182453143
OIMH01003390
[OIMH] human gut metagenome; human gut
556
629
+
Asn
GTT
[ENA]
¢þ
>WENV182453140
OIMH01002714
[OIMH] human gut metagenome; human gut
563
636
+
Lys
TTT
[ENA]
¢þ
>WENV182453144
OIMH01003400
[OIMH] human gut metagenome; human gut
574
500
-
Asp
GTC
[ENA]
¢þ
>WENV182453126
OIMH01000404
[OIMH] human gut metagenome; human gut
583
659
+
Arg
CCG
[ENA]
¢þ
>WENV182453146
OIMH01004112
[OIMH] human gut metagenome; human gut
599
524
-
Trp
CCA
[ENA]
¢þ
>WENV182453134
OIMH01001141
[OIMH] human gut metagenome; human gut
655
728
+
Thr
CGT
[ENA]
¢þ
>WENV182453127
OIMH01000404
[OIMH] human gut metagenome; human gut
718
793
+
His
GTG
[ENA]
¢þ
>WENV182453131
OIMH01000652
[OIMH] human gut metagenome; human gut
753
826
+
Trp
CCA
[ENA]
¢þ
>WENV182453128
OIMH01000404
[OIMH] human gut metagenome; human gut
814
900
+
Leu
CAG
[ENA]
¢þ
>WENV182453122
OIMH01000234
[OIMH] human gut metagenome; human gut
829
746
-
Tyr
GTA
[ENA]
¢þ
>WENV182453135
OIMH01001204
[OIMH] human gut metagenome; human gut
866
792
-
Thr
TGT
[ENA]
¢þ
>WENV182453129
OIMH01000404
[OIMH] human gut metagenome; human gut
943
1019
+
Pro
TGG
[ENA]
¢þ
>WENV182453133
OIMH01001029
[OIMH] human gut metagenome; human gut
1009
1080
+
Gln
TTG
[ENA]
¢þ
>WENV182453116
OIMH01000047
[OIMH] human gut metagenome; human gut
1032
1104
+
Arg
CCT
[ENA]
¢þ
>WENV182453125
OIMH01000364
[OIMH] human gut metagenome; human gut
1126
1042
-
Leu
TAA
[ENA]
¢þ
>WENV182453124
OIMH01000364
[OIMH] human gut metagenome; human gut
1215
1142
-
Gly
GCC
[ENA]
¢þ
>WENV182453130
OIMH01000443
[OIMH] human gut metagenome; human gut
1220
1136
-
Leu
CAA
[ENA]
¢þ
>WENV182453117
OIMH01000072
[OIMH] human gut metagenome; human gut
1686
1762
+
Ile
GAT
[ENA]
¢þ
>WENV182453118
OIMH01000072
[OIMH] human gut metagenome; human gut
1791
1865
+
Ala
TGC
[ENA]
¢þ
>WENV182453121
OIMH01000213
[OIMH] human gut metagenome; human gut
1895
1824
-
Gln
TTG
[ENA]
¢þ
>WENV182453120
OIMH01000147
[OIMH] human gut metagenome; human gut
1980
1907
-
Pro
CGG
[ENA]
¢þ
>WENV182453119
OIMH01000147
[OIMH] human gut metagenome; human gut
2065
1992
-
Phe
GAA
[ENA]
¢þ
>WENV182453115
OIMH01000010
[OIMH] human gut metagenome; human gut
3731
3656
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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