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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIMQ] human gut metagenome; human gut
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182455544
OIMQ01005029
[OIMQ] human gut metagenome; human gut
56
143
+
Ser
GCT
[ENA]
¢þ
>WENV182455514
OIMQ01000190
[OIMQ] human gut metagenome; human gut
89
17
-
Arg
CCT
[ENA]
¢þ
>WENV182455521
OIMQ01001142
[OIMQ] human gut metagenome; human gut
93
9
-
Leu
CAA
[ENA]
¢þ
>WENV182455524
OIMQ01001510
[OIMQ] human gut metagenome; human gut
97
173
+
Asp
GTC
[ENA]
¢þ
>WENV182455507
OIMQ01000063
[OIMQ] human gut metagenome; human gut
99
11
-
Leu
TAA
[ENA]
¢þ
>WENV182455529
OIMQ01002623
[OIMQ] human gut metagenome; human gut
103
177
+
Glu
CTC
[ENA]
¢þ
>WENV182455542
OIMQ01004541
[OIMQ] human gut metagenome; human gut
177
102
-
Ala
TGC
[ENA]
¢þ
>WENV182455530
OIMQ01002623
[OIMQ] human gut metagenome; human gut
181
256
+
Lys
CTT
[ENA]
¢þ
>WENV182455506
OIMQ01000063
[OIMQ] human gut metagenome; human gut
191
117
-
Val
TAC
[ENA]
¢þ
>WENV182455547
OIMQ01005948
[OIMQ] human gut metagenome; human gut
195
111
-
Tyr
GTA
[ENA]
¢þ
>WENV182455545
OIMQ01005029
[OIMQ] human gut metagenome; human gut
221
293
+
Glu
CTC
[ENA]
¢þ
>WENV182455518
OIMQ01000900
[OIMQ] human gut metagenome; human gut
276
203
-
Lys
TTT
[ENA]
¢þ
>WENV182455505
OIMQ01000063
[OIMQ] human gut metagenome; human gut
295
220
-
Asp
GTC
[ENA]
¢þ
>WENV182455535
OIMQ01002953
[OIMQ] human gut metagenome; human gut
309
392
+
Tyr
GTA
[ENA]
¢þ
>WENV182455516
OIMQ01000443
[OIMQ] human gut metagenome; human gut
335
407
+
Glu
TTC
[ENA]
¢þ
>WENV182455541
OIMQ01004541
[OIMQ] human gut metagenome; human gut
345
270
-
Ile
GAT
[ENA]
¢þ
>WENV182455543
OIMQ01004866
[OIMQ] human gut metagenome; human gut
355
429
+
Thr
TGT
[ENA]
¢þ
>WENV182455538
OIMQ01003577
[OIMQ] human gut metagenome; human gut
384
296
-
Ser
GGA
[ENA]
¢þ
>WENV182455532
OIMQ01002800
[OIMQ] human gut metagenome; human gut
386
315
-
Gln
TTG
[ENA]
¢þ
>WENV182455539
OIMQ01003805
[OIMQ] human gut metagenome; human gut
389
463
+
Ala
GGC
[ENA]
¢þ
>WENV182455528
OIMQ01002589
[OIMQ] human gut metagenome; human gut
393
318
-
Pro
GGG
[ENA]
¢þ
>WENV182455523
OIMQ01001372
[OIMQ] human gut metagenome; human gut
414
338
-
Pro
TGG
[ENA]
¢þ
>WENV182455533
OIMQ01002943
[OIMQ] human gut metagenome; human gut
418
494
+
Met
CAT
[ENA]
¢þ
>WENV182455525
OIMQ01001560
[OIMQ] human gut metagenome; human gut
430
356
-
Ile2
CAT
[ENA]
¢þ
>WENV182455527
OIMQ01002098
[OIMQ] human gut metagenome; human gut
438
365
-
Gly
GCC
[ENA]
¢þ
>WENV182455546
OIMQ01005948
[OIMQ] human gut metagenome; human gut
454
380
-
Thr
TGT
[ENA]
¢þ
>WENV182455540
OIMQ01004216
[OIMQ] human gut metagenome; human gut
459
534
+
Val
TAC
[ENA]
¢þ
>WENV182455522
OIMQ01001372
[OIMQ] human gut metagenome; human gut
543
457
-
Leu
CAG
[ENA]
¢þ
>WENV182455534
OIMQ01002943
[OIMQ] human gut metagenome; human gut
543
617
+
Gln
CTG
[ENA]
¢þ
>WENV182455526
OIMQ01001627
[OIMQ] human gut metagenome; human gut
546
621
+
Ile2
CAT
[ENA]
¢þ
>WENV182455537
OIMQ01003319
[OIMQ] human gut metagenome; human gut
566
491
-
Phe
GAA
[ENA]
¢þ
>WENV182455531
OIMQ01002750
[OIMQ] human gut metagenome; human gut
616
687
+
Gln
CTG
[ENA]
¢þ
>WENV182455536
OIMQ01003068
[OIMQ] human gut metagenome; human gut
627
552
-
Thr
GGT
[ENA]
¢þ
>WENV182455520
OIMQ01001047
[OIMQ] human gut metagenome; human gut
659
732
+
Phe
GAA
[ENA]
¢þ
>WENV182455512
OIMQ01000169
[OIMQ] human gut metagenome; human gut
776
702
-
Ile2
CAT
[ENA]
¢þ
>WENV182455513
OIMQ01000175
[OIMQ] human gut metagenome; human gut
1019
1094
+
Val
TAC
[ENA]
¢þ
>WENV182455519
OIMQ01000998
[OIMQ] human gut metagenome; human gut
1058
984
-
Asp
GTC
[ENA]
¢þ
>WENV182455515
OIMQ01000302
[OIMQ] human gut metagenome; human gut
1173
1246
+
Trp
CCA
[ENA]
¢þ
>WENV182455517
OIMQ01000456
[OIMQ] human gut metagenome; human gut
1288
1361
+
fMet
CAT
[ENA]
¢þ
>WENV182455509
OIMQ01000076
[OIMQ] human gut metagenome; human gut
1371
1297
-
Ala
TGC
[ENA]
¢þ
>WENV182455508
OIMQ01000076
[OIMQ] human gut metagenome; human gut
1476
1400
-
Ile
GAT
[ENA]
¢þ
>WENV182455511
OIMQ01000130
[OIMQ] human gut metagenome; human gut
1930
2004
+
Thr
TGT
[ENA]
¢þ
>WENV182455503
OIMQ01000009
[OIMQ] human gut metagenome; human gut
2161
2236
+
Glu
TTC
[ENA]
¢þ
>WENV182455510
OIMQ01000113
[OIMQ] human gut metagenome; human gut
2394
2476
+
Leu
TAG
[ENA]
¢þ
>WENV182455504
OIMQ01000014
[OIMQ] human gut metagenome; human gut
3166
3240
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK