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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIMX] human gut metagenome; human gut
HIT:
131 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182456308
OIMX01002190
[OIMX] human gut metagenome; human gut
1
74
+
Thr
CGT
[ENA]
¢þ
>WENV182456256
OIMX01000131
[OIMX] human gut metagenome; human gut
3
90
+
Ser
GCT
[ENA]
¢þ
>WENV182456329
OIMX01004813
[OIMX] human gut metagenome; human gut
5
79
+
Asp
GTC
[ENA]
¢þ
>WENV182456231
OIMX01000015
[OIMX] human gut metagenome; human gut
5
93
+
Ser
GGA
[ENA]
¢þ
>WENV182456265
OIMX01000210
[OIMX] human gut metagenome; human gut
13
98
+
Ser
TGA
[ENA]
¢þ
>WENV182456243
OIMX01000053
[OIMX] human gut metagenome; human gut
14
88
+
Arg
TCT
[ENA]
¢þ
>WENV182456315
OIMX01002670
[OIMX] human gut metagenome; human gut
40
111
+
Glu
TTC
[ENA]
¢þ
>WENV182456252
OIMX01000105
[OIMX] human gut metagenome; human gut
75
1
-
Ala
GGC
[ENA]
¢þ
>WENV182456292
OIMX01000904
[OIMX] human gut metagenome; human gut
124
49
-
Val
GAC
[ENA]
¢þ
>WENV182456332
OIMX01006774
[OIMX] human gut metagenome; human gut
134
58
-
Asp
GTC
[ENA]
¢þ
>WENV182456306
OIMX01001486
[OIMX] human gut metagenome; human gut
167
242
+
Thr
CGT
[ENA]
¢þ
>WENV182456316
OIMX01002670
[OIMX] human gut metagenome; human gut
185
258
+
Asn
GTT
[ENA]
¢þ
>WENV182456307
OIMX01002020
[OIMX] human gut metagenome; human gut
188
100
-
Ser
GGA
[ENA]
¢þ
>WENV182456299
OIMX01001145
[OIMX] human gut metagenome; human gut
196
121
-
Ala
GGC
[ENA]
¢þ
>WENV182456281
OIMX01000625
[OIMX] human gut metagenome; human gut
196
123
-
Asn
GTT
[ENA]
¢þ
>WENV182456319
OIMX01003323
[OIMX] human gut metagenome; human gut
249
323
+
Ala
GGC
[ENA]
¢þ
>WENV182456340
OIMX01009550
[OIMX] human gut metagenome; human gut
250
323
+
Thr
TGT
[ENA]
¢þ
>WENV182456338
OIMX01008447
[OIMX] human gut metagenome; human gut
271
344
+
Lys
CTT
[ENA]
¢þ
>WENV182456305
OIMX01001440
[OIMX] human gut metagenome; human gut
280
206
-
Ala
TGC
[ENA]
¢þ
>WENV182456317
OIMX01002670
[OIMX] human gut metagenome; human gut
294
366
+
Cys
GCA
[ENA]
¢þ
>WENV182456311
OIMX01002517
[OIMX] human gut metagenome; human gut
299
374
+
Arg
CCT
[ENA]
¢þ
>WENV182456336
OIMX01008330
[OIMX] human gut metagenome; human gut
302
375
+
Ala
TGC
[ENA]
¢þ
>WENV182456333
OIMX01007404
[OIMX] human gut metagenome; human gut
317
392
+
Pro
CGG
[ENA]
¢þ
>WENV182456302
OIMX01001309
[OIMX] human gut metagenome; human gut
332
406
+
Arg
ACG
[ENA]
¢þ
>WENV182456257
OIMX01000131
[OIMX] human gut metagenome; human gut
350
423
+
Glu
CTC
[ENA]
¢þ
>WENV182456304
OIMX01001440
[OIMX] human gut metagenome; human gut
369
295
-
Ile
GAT
[ENA]
¢þ
>WENV182456343
OIMX01009743
[OIMX] human gut metagenome; human gut
380
305
-
Gly
CCC
[ENA]
¢þ
>WENV182456331
OIMX01006774
[OIMX] human gut metagenome; human gut
386
311
-
Trp
CCA
[ENA]
¢þ
>WENV182456341
OIMX01009550
[OIMX] human gut metagenome; human gut
397
471
+
Lys
TTT
[ENA]
¢þ
>WENV182456337
OIMX01008330
[OIMX] human gut metagenome; human gut
398
472
+
Ile
GAT
[ENA]
¢þ
>WENV182456328
OIMX01004647
[OIMX] human gut metagenome; human gut
429
356
-
Gly
CCC
[ENA]
¢þ
>WENV182456339
OIMX01008461
[OIMX] human gut metagenome; human gut
441
369
-
Arg
CCT
[ENA]
¢þ
>WENV182456325
OIMX01003855
[OIMX] human gut metagenome; human gut
449
362
-
Leu
TAA
[ENA]
¢þ
>WENV182456342
OIMX01009663
[OIMX] human gut metagenome; human gut
454
379
-
Thr
CGT
[ENA]
¢þ
>WENV182456335
OIMX01008236
[OIMX] human gut metagenome; human gut
465
376
-
Ser
GCT
[ENA]
¢þ
>WENV182456344
OIMX01009904
[OIMX] human gut metagenome; human gut
508
433
-
Ala
CGC
[ENA]
¢þ
>WENV182456324
OIMX01003855
[OIMX] human gut metagenome; human gut
525
451
-
Val
TAC
[ENA]
¢þ
>WENV182456318
OIMX01003189
[OIMX] human gut metagenome; human gut
537
454
-
Leu
GAG
[ENA]
¢þ
>WENV182456330
OIMX01006065
[OIMX] human gut metagenome; human gut
563
639
+
Asp
GTC
[ENA]
¢þ
>WENV182456334
OIMX01007911
[OIMX] human gut metagenome; human gut
583
510
-
Lys
TTT
[ENA]
¢þ
>WENV182456323
OIMX01003855
[OIMX] human gut metagenome; human gut
628
553
-
Asp
GTC
[ENA]
¢þ
>WENV182456312
OIMX01002564
[OIMX] human gut metagenome; human gut
632
719
+
Ser
TGA
[ENA]
¢þ
>WENV182456266
OIMX01000294
[OIMX] human gut metagenome; human gut
633
706
+
Lys
TTT
[ENA]
¢þ
>WENV182456322
OIMX01003855
[OIMX] human gut metagenome; human gut
726
651
-
Ile2
CAT
[ENA]
¢þ
>WENV182456313
OIMX01002564
[OIMX] human gut metagenome; human gut
752
845
+
Ser
GCT
[ENA]
¢þ
>WENV182456321
OIMX01003855
[OIMX] human gut metagenome; human gut
802
730
-
Thr
TGT
[ENA]
¢þ
>WENV182456326
OIMX01003920
[OIMX] human gut metagenome; human gut
810
719
-
Ser
GGA
[ENA]
¢þ
>WENV182456327
OIMX01004624
[OIMX] human gut metagenome; human gut
838
763
-
Ala
TGC
[ENA]
¢þ
>WENV182456320
OIMX01003855
[OIMX] human gut metagenome; human gut
900
826
-
Val
TAC
[ENA]
¢þ
>WENV182456309
OIMX01002325
[OIMX] human gut metagenome; human gut
911
985
+
Thr
TGT
[ENA]
¢þ
>WENV182456314
OIMX01002608
[OIMX] human gut metagenome; human gut
1032
958
-
Ala
TGC
[ENA]
¢þ
>WENV182456301
OIMX01001281
[OIMX] human gut metagenome; human gut
1060
1136
+
Arg
CCG
[ENA]
¢þ
>WENV182456285
OIMX01000700
[OIMX] human gut metagenome; human gut
1091
1018
-
Pro
CGG
[ENA]
¢þ
>WENV182456282
OIMX01000664
[OIMX] human gut metagenome; human gut
1096
1181
+
Tyr
GTA
[ENA]
¢þ
>WENV182456286
OIMX01000777
[OIMX] human gut metagenome; human gut
1115
1043
-
Glu
TTC
[ENA]
¢þ
>WENV182456280
OIMX01000584
[OIMX] human gut metagenome; human gut
1156
1240
+
Leu
CAG
[ENA]
¢þ
>WENV182456284
OIMX01000700
[OIMX] human gut metagenome; human gut
1194
1121
-
Gln
CTG
[ENA]
¢þ
>WENV182456275
OIMX01000455
[OIMX] human gut metagenome; human gut
1201
1130
-
Gln
TTG
[ENA]
¢þ
>WENV182456310
OIMX01002406
[OIMX] human gut metagenome; human gut
1272
1346
+
Pro
GGG
[ENA]
¢þ
>WENV182456295
OIMX01000991
[OIMX] human gut metagenome; human gut
1283
1209
-
Thr
TGT
[ENA]
¢þ
>WENV182456288
OIMX01000788
[OIMX] human gut metagenome; human gut
1334
1409
+
Phe
GAA
[ENA]
¢þ
>WENV182456290
OIMX01000866
[OIMX] human gut metagenome; human gut
1349
1437
+
Ser
GGA
[ENA]
¢þ
>WENV182456277
OIMX01000532
[OIMX] human gut metagenome; human gut
1364
1437
+
Trp
CCA
[ENA]
¢þ
>WENV182456276
OIMX01000458
[OIMX] human gut metagenome; human gut
1477
1401
-
Arg
ACG
[ENA]
¢þ
>WENV182456289
OIMX01000788
[OIMX] human gut metagenome; human gut
1573
1648
+
Gly
GCC
[ENA]
¢þ
>WENV182456303
OIMX01001310
[OIMX] human gut metagenome; human gut
1815
1740
-
Ile2
CAT
[ENA]
¢þ
>WENV182456260
OIMX01000165
[OIMX] human gut metagenome; human gut
1949
1865
-
Leu
TAA
[ENA]
¢þ
>WENV182456259
OIMX01000165
[OIMX] human gut metagenome; human gut
2038
1965
-
Gly
GCC
[ENA]
¢þ
>WENV182456291
OIMX01000894
[OIMX] human gut metagenome; human gut
2155
2230
+
Thr
GGT
[ENA]
¢þ
>WENV182456300
OIMX01001201
[OIMX] human gut metagenome; human gut
2223
2144
-
Leu
CAA
[ENA]
¢þ
>WENV182456261
OIMX01000173
[OIMX] human gut metagenome; human gut
2239
2329
+
Ser
CGA
[ENA]
¢þ
>WENV182456283
OIMX01000683
[OIMX] human gut metagenome; human gut
2246
2319
+
Trp
CCA
[ENA]
¢þ
>WENV182456294
OIMX01000980
[OIMX] human gut metagenome; human gut
2286
2210
-
His
GTG
[ENA]
¢þ
>WENV182456293
OIMX01000980
[OIMX] human gut metagenome; human gut
2369
2294
-
Arg
TCT
[ENA]
¢þ
>WENV182456297
OIMX01001012
[OIMX] human gut metagenome; human gut
2440
2515
+
fMet
CAT
[ENA]
¢þ
>WENV182456298
OIMX01001012
[OIMX] human gut metagenome; human gut
2518
2592
+
Phe
GAA
[ENA]
¢þ
>WENV182456296
OIMX01001002
[OIMX] human gut metagenome; human gut
2556
2647
+
Ser
GGA
[ENA]
¢þ
>WENV182456271
OIMX01000351
[OIMX] human gut metagenome; human gut
2695
2622
-
Trp
CCA
[ENA]
¢þ
>WENV182456268
OIMX01000313
[OIMX] human gut metagenome; human gut
2779
2708
-
Glu
TTC
[ENA]
¢þ
>WENV182456287
OIMX01000779
[OIMX] human gut metagenome; human gut
2877
2960
+
Leu
TAA
[ENA]
¢þ
>WENV182456267
OIMX01000313
[OIMX] human gut metagenome; human gut
2947
2871
-
Met
CAT
[ENA]
¢þ
>WENV182456274
OIMX01000441
[OIMX] human gut metagenome; human gut
3257
3182
-
Pro
TGG
[ENA]
¢þ
>WENV182456272
OIMX01000363
[OIMX] human gut metagenome; human gut
3261
3190
-
Gln
CTG
[ENA]
¢þ
>WENV182456251
OIMX01000083
[OIMX] human gut metagenome; human gut
3289
3363
+
Asn
GTT
[ENA]
¢þ
>WENV182456279
OIMX01000559
[OIMX] human gut metagenome; human gut
3821
3747
-
Cys
GCA
[ENA]
¢þ
>WENV182456278
OIMX01000549
[OIMX] human gut metagenome; human gut
3870
3946
+
Val
CAC
[ENA]
¢þ
>WENV182456270
OIMX01000351
[OIMX] human gut metagenome; human gut
4055
3983
-
Thr
GGT
[ENA]
¢þ
>WENV182456269
OIMX01000351
[OIMX] human gut metagenome; human gut
4154
4071
-
Tyr
GTA
[ENA]
¢þ
>WENV182456273
OIMX01000368
[OIMX] human gut metagenome; human gut
5056
4980
-
Arg
CCT
[ENA]
¢þ
>WENV182456264
OIMX01000205
[OIMX] human gut metagenome; human gut
6423
6347
-
Asn
GTT
[ENA]
¢þ
>WENV182456263
OIMX01000205
[OIMX] human gut metagenome; human gut
6537
6463
-
Glu
CTC
[ENA]
¢þ
>WENV182456253
OIMX01000113
[OIMX] human gut metagenome; human gut
7456
7530
+
Asp
GTC
[ENA]
¢þ
>WENV182456254
OIMX01000124
[OIMX] human gut metagenome; human gut
7623
7550
-
Gly
CCC
[ENA]
¢þ
>WENV182456241
OIMX01000042
[OIMX] human gut metagenome; human gut
8474
8402
-
Glu
TTC
[ENA]
¢þ
>WENV182456244
OIMX01000055
[OIMX] human gut metagenome; human gut
9736
9810
+
His
GTG
[ENA]
¢þ
>WENV182456250
OIMX01000080
[OIMX] human gut metagenome; human gut
10129
10204
+
Val
TAC
[ENA]
¢þ
>WENV182456233
OIMX01000021
[OIMX] human gut metagenome; human gut
10917
10990
+
Thr
CGT
[ENA]
¢þ
>WENV182456262
OIMX01000196
[OIMX] human gut metagenome; human gut
11580
11505
-
Pro
TGG
[ENA]
¢þ
>WENV182456223
OIMX01000006
[OIMX] human gut metagenome; human gut
13164
13238
+
Asn
GTT
[ENA]
¢þ
>WENV182456258
OIMX01000157
[OIMX] human gut metagenome; human gut
13303
13229
-
Thr
TGT
[ENA]
¢þ
>WENV182456248
OIMX01000076
[OIMX] human gut metagenome; human gut
16134
16052
-
Leu
TAG
[ENA]
¢þ
>WENV182456255
OIMX01000129
[OIMX] human gut metagenome; human gut
21707
21781
+
Thr
TGT
[ENA]
¢þ
>WENV182456239
OIMX01000035
[OIMX] human gut metagenome; human gut
24885
24957
+
Cys
GCA
[ENA]
¢þ
>WENV182456249
OIMX01000079
[OIMX] human gut metagenome; human gut
27933
28021
+
Ser
GGA
[ENA]
¢þ
>WENV182456246
OIMX01000071
[OIMX] human gut metagenome; human gut
27959
27885
-
Glu
TTC
[ENA]
¢þ
>WENV182456226
OIMX01000009
[OIMX] human gut metagenome; human gut
30364
30435
+
Gln
TTG
[ENA]
¢þ
>WENV182456247
OIMX01000072
[OIMX] human gut metagenome; human gut
30701
30627
-
Thr
TGT
[ENA]
¢þ
>WENV182456245
OIMX01000059
[OIMX] human gut metagenome; human gut
34152
34080
-
Arg
CCG
[ENA]
¢þ
>WENV182456216
OIMX01000001
[OIMX] human gut metagenome; human gut
37321
37236
-
Leu
TAA
[ENA]
¢þ
>WENV182456215
OIMX01000001
[OIMX] human gut metagenome; human gut
37410
37337
-
Gly
GCC
[ENA]
¢þ
>WENV182456238
OIMX01000033
[OIMX] human gut metagenome; human gut
38958
38885
-
Gly
GCC
[ENA]
¢þ
>WENV182456234
OIMX01000022
[OIMX] human gut metagenome; human gut
40626
40554
-
Glu
TTC
[ENA]
¢þ
>WENV182456228
OIMX01000013
[OIMX] human gut metagenome; human gut
42334
42411
+
Val
TAC
[ENA]
¢þ
>WENV182456235
OIMX01000030
[OIMX] human gut metagenome; human gut
44763
44836
+
Trp
CCA
[ENA]
¢þ
>WENV182456232
OIMX01000019
[OIMX] human gut metagenome; human gut
49981
50055
+
Asp
GTC
[ENA]
¢þ
>WENV182456242
OIMX01000052
[OIMX] human gut metagenome; human gut
53978
54051
+
Cys
GCA
[ENA]
¢þ
>WENV182456225
OIMX01000008
[OIMX] human gut metagenome; human gut
54291
54220
-
Gln
TTG
[ENA]
¢þ
>WENV182456229
OIMX01000013
[OIMX] human gut metagenome; human gut
61208
61135
-
fMet
CAT
[ENA]
¢þ
>WENV182456237
OIMX01000032
[OIMX] human gut metagenome; human gut
62591
62518
-
Phe
GAA
[ENA]
¢þ
>WENV182456240
OIMX01000042
[OIMX] human gut metagenome; human gut
63429
63513
+
Leu
CAA
[ENA]
¢þ
>WENV182456236
OIMX01000031
[OIMX] human gut metagenome; human gut
69557
69483
-
Ala
GGC
[ENA]
¢þ
>WENV182456222
OIMX01000005
[OIMX] human gut metagenome; human gut
76901
76826
-
Pro
GGG
[ENA]
¢þ
>WENV182456227
OIMX01000009
[OIMX] human gut metagenome; human gut
90344
90270
-
Ile2
CAT
[ENA]
¢þ
>WENV182456230
OIMX01000014
[OIMX] human gut metagenome; human gut
97332
97258
-
Met
CAT
[ENA]
¢þ
>WENV182456214
OIMX01000001
[OIMX] human gut metagenome; human gut
106489
106561
+
Arg
CCT
[ENA]
¢þ
>WENV182456218
OIMX01000002
[OIMX] human gut metagenome; human gut
108045
107972
-
Trp
CCA
[ENA]
¢þ
>WENV182456220
OIMX01000005
[OIMX] human gut metagenome; human gut
110690
110761
+
Gln
CTG
[ENA]
¢þ
>WENV182456224
OIMX01000007
[OIMX] human gut metagenome; human gut
114537
114463
-
Ile2
CAT
[ENA]
¢þ
>WENV182456217
OIMX01000002
[OIMX] human gut metagenome; human gut
121672
121757
+
Ser
TGA
[ENA]
¢þ
>WENV182456219
OIMX01000003
[OIMX] human gut metagenome; human gut
134509
134582
+
Pro
CGG
[ENA]
¢þ
>WENV182456221
OIMX01000005
[OIMX] human gut metagenome; human gut
135034
135122
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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