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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OINB] human gut metagenome; human gut
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182456869
OINB01006126
[OINB] human gut metagenome; human gut
54
129
+
Asp
GTC
[ENA]
¢þ
>WENV182456847
OINB01002261
[OINB] human gut metagenome; human gut
68
143
+
Gly
GCC
[ENA]
¢þ
>WENV182456826
OINB01000230
[OINB] human gut metagenome; human gut
83
157
+
Asn
GTT
[ENA]
¢þ
>WENV182456867
OINB01005923
[OINB] human gut metagenome; human gut
122
40
-
Tyr
GTA
[ENA]
¢þ
>WENV182456858
OINB01004857
[OINB] human gut metagenome; human gut
143
61
-
Leu
CAG
[ENA]
¢þ
>WENV182456861
OINB01005623
[OINB] human gut metagenome; human gut
145
233
+
Ser
GGA
[ENA]
¢þ
>WENV182456848
OINB01002668
[OINB] human gut metagenome; human gut
151
64
-
Ser
GCT
[ENA]
¢þ
>WENV182456836
OINB01001029
[OINB] human gut metagenome; human gut
158
242
+
Leu
CAA
[ENA]
¢þ
>WENV182456843
OINB01002017
[OINB] human gut metagenome; human gut
165
94
-
Gln
TTG
[ENA]
¢þ
>WENV182456846
OINB01002079
[OINB] human gut metagenome; human gut
171
87
-
Tyr
GTA
[ENA]
¢þ
>WENV182456859
OINB01005080
[OINB] human gut metagenome; human gut
177
252
+
Asn
GTT
[ENA]
¢þ
>WENV182456854
OINB01004279
[OINB] human gut metagenome; human gut
216
301
+
Ser
GCT
[ENA]
¢þ
>WENV182456851
OINB01003756
[OINB] human gut metagenome; human gut
226
155
-
Gln
TTG
[ENA]
¢þ
>WENV182456868
OINB01005967
[OINB] human gut metagenome; human gut
240
169
-
Gln
CTG
[ENA]
¢þ
>WENV182456845
OINB01002079
[OINB] human gut metagenome; human gut
255
180
-
Thr
TGT
[ENA]
¢þ
>WENV182456844
OINB01002024
[OINB] human gut metagenome; human gut
257
183
-
Arg
TCT
[ENA]
¢þ
>WENV182456870
OINB01006126
[OINB] human gut metagenome; human gut
269
345
+
Asp
GTC
[ENA]
¢þ
>WENV182456827
OINB01000339
[OINB] human gut metagenome; human gut
283
357
+
Thr
TGT
[ENA]
¢þ
>WENV182456850
OINB01003469
[OINB] human gut metagenome; human gut
292
366
+
Arg
CCT
[ENA]
¢þ
>WENV182456819
OINB01000014
[OINB] human gut metagenome; human gut
293
217
-
Asn
GTT
[ENA]
¢þ
>WENV182456855
OINB01004279
[OINB] human gut metagenome; human gut
308
382
+
Arg
ACG
[ENA]
¢þ
>WENV182456849
OINB01002851
[OINB] human gut metagenome; human gut
311
387
+
Pro
CGG
[ENA]
¢þ
>WENV182456863
OINB01005856
[OINB] human gut metagenome; human gut
313
384
+
Gln
CTG
[ENA]
¢þ
>WENV182456862
OINB01005692
[OINB] human gut metagenome; human gut
332
419
+
Ser
TGA
[ENA]
¢þ
>WENV182456871
OINB01006126
[OINB] human gut metagenome; human gut
349
424
+
Thr
GGT
[ENA]
¢þ
>WENV182456866
OINB01005923
[OINB] human gut metagenome; human gut
358
286
-
Glu
TTC
[ENA]
¢þ
>WENV182456856
OINB01004279
[OINB] human gut metagenome; human gut
387
460
+
Phe
GAA
[ENA]
¢þ
>WENV182456828
OINB01000339
[OINB] human gut metagenome; human gut
400
483
+
Tyr
GTA
[ENA]
¢þ
>WENV182456818
OINB01000014
[OINB] human gut metagenome; human gut
407
333
-
Glu
CTC
[ENA]
¢þ
>WENV182456838
OINB01001126
[OINB] human gut metagenome; human gut
413
488
+
Pro
GGG
[ENA]
¢þ
>WENV182456841
OINB01001865
[OINB] human gut metagenome; human gut
426
499
+
fMet
CAT
[ENA]
¢þ
>WENV182456853
OINB01003966
[OINB] human gut metagenome; human gut
427
354
-
Thr
CGT
[ENA]
¢þ
>WENV182456865
OINB01005923
[OINB] human gut metagenome; human gut
434
363
-
Gln
TTG
[ENA]
¢þ
>WENV182456852
OINB01003804
[OINB] human gut metagenome; human gut
453
366
-
Ser
GGA
[ENA]
¢þ
>WENV182456857
OINB01004279
[OINB] human gut metagenome; human gut
470
544
+
His
GTG
[ENA]
¢þ
>WENV182456837
OINB01001034
[OINB] human gut metagenome; human gut
473
545
+
Arg
CCT
[ENA]
¢þ
>WENV182456864
OINB01005923
[OINB] human gut metagenome; human gut
512
439
-
Trp
CCA
[ENA]
¢þ
>WENV182456860
OINB01005528
[OINB] human gut metagenome; human gut
517
443
-
Thr
TGT
[ENA]
¢þ
>WENV182456825
OINB01000192
[OINB] human gut metagenome; human gut
541
469
-
Glu
TTC
[ENA]
¢þ
>WENV182456829
OINB01000339
[OINB] human gut metagenome; human gut
576
648
+
Thr
GGT
[ENA]
¢þ
>WENV182456833
OINB01000969
[OINB] human gut metagenome; human gut
593
509
-
Leu
TAA
[ENA]
¢þ
>WENV182456823
OINB01000120
[OINB] human gut metagenome; human gut
645
571
-
Ile2
CAT
[ENA]
¢þ
>WENV182456842
OINB01001983
[OINB] human gut metagenome; human gut
651
576
-
Ile2
CAT
[ENA]
¢þ
>WENV182456832
OINB01000969
[OINB] human gut metagenome; human gut
680
607
-
Gly
GCC
[ENA]
¢þ
>WENV182456839
OINB01001460
[OINB] human gut metagenome; human gut
757
683
-
Asp
GTC
[ENA]
¢þ
>WENV182456840
OINB01001575
[OINB] human gut metagenome; human gut
911
820
-
Ser
CGA
[ENA]
¢þ
>WENV182456834
OINB01000976
[OINB] human gut metagenome; human gut
958
1040
+
Leu
TAG
[ENA]
¢þ
>WENV182456831
OINB01000899
[OINB] human gut metagenome; human gut
981
1054
+
Lys
TTT
[ENA]
¢þ
>WENV182456835
OINB01001022
[OINB] human gut metagenome; human gut
998
913
-
Ser
TGA
[ENA]
¢þ
>WENV182456820
OINB01000067
[OINB] human gut metagenome; human gut
1323
1396
+
Trp
CCA
[ENA]
¢þ
>WENV182456830
OINB01000355
[OINB] human gut metagenome; human gut
1408
1481
+
Phe
GAA
[ENA]
¢þ
>WENV182456821
OINB01000084
[OINB] human gut metagenome; human gut
1698
1774
+
Ile
GAT
[ENA]
¢þ
>WENV182456822
OINB01000084
[OINB] human gut metagenome; human gut
1803
1877
+
Ala
TGC
[ENA]
¢þ
>WENV182456824
OINB01000145
[OINB] human gut metagenome; human gut
2201
2128
-
Ala
TGC
[ENA]
¢þ
>WENV182456815
OINB01000004
[OINB] human gut metagenome; human gut
3664
3739
+
Glu
TTC
[ENA]
¢þ
>WENV182456816
OINB01000004
[OINB] human gut metagenome; human gut
7105
7181
+
Asp
GTC
[ENA]
¢þ
>WENV182456817
OINB01000004
[OINB] human gut metagenome; human gut
7190
7265
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK