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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OINT] human gut metagenome; human gut
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182461631
OINT01003325
[OINT] human gut metagenome; human gut
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV182461613
OINT01000992
[OINT] human gut metagenome; human gut
16
89
+
Arg
CCT
[ENA]
¢þ
>WENV182461622
OINT01002809
[OINT] human gut metagenome; human gut
96
171
+
Ala
TGC
[ENA]
¢þ
>WENV182461602
OINT01000549
[OINT] human gut metagenome; human gut
156
84
-
Cys
GCA
[ENA]
¢þ
>WENV182461623
OINT01002809
[OINT] human gut metagenome; human gut
175
251
+
Ile
GAT
[ENA]
¢þ
>WENV182461624
OINT01003007
[OINT] human gut metagenome; human gut
182
256
+
Pro
GGG
[ENA]
¢þ
>WENV182461630
OINT01003307
[OINT] human gut metagenome; human gut
200
117
-
Tyr
GTA
[ENA]
¢þ
>WENV182461618
OINT01001523
[OINT] human gut metagenome; human gut
226
302
+
Arg
CCG
[ENA]
¢þ
>WENV182461557
OINT01000013
[OINT] human gut metagenome; human gut
233
158
-
His
GTG
[ENA]
¢þ
>WENV182461619
OINT01002019
[OINT] human gut metagenome; human gut
258
184
-
Thr
GGT
[ENA]
¢þ
>WENV182461629
OINT01003227
[OINT] human gut metagenome; human gut
261
186
-
Pro
CGG
[ENA]
¢þ
>WENV182461621
OINT01002420
[OINT] human gut metagenome; human gut
267
342
+
Arg
CCT
[ENA]
¢þ
>WENV182461625
OINT01003007
[OINT] human gut metagenome; human gut
287
357
+
Gly
TCC
[ENA]
¢þ
>WENV182461617
OINT01001268
[OINT] human gut metagenome; human gut
290
200
-
Leu
TAA
[ENA]
¢þ
>WENV182461628
OINT01003227
[OINT] human gut metagenome; human gut
366
294
-
Gln
CTG
[ENA]
¢þ
>WENV182461614
OINT01001032
[OINT] human gut metagenome; human gut
377
464
+
Ser
TGA
[ENA]
¢þ
>WENV182461632
OINT01003620
[OINT] human gut metagenome; human gut
381
308
-
Glu
CTC
[ENA]
¢þ
>WENV182461626
OINT01003007
[OINT] human gut metagenome; human gut
408
483
+
Arg
TCT
[ENA]
¢þ
>WENV182461567
OINT01000068
[OINT] human gut metagenome; human gut
424
497
+
Thr
CGT
[ENA]
¢þ
>WENV182461627
OINT01003007
[OINT] human gut metagenome; human gut
488
561
+
His
GTG
[ENA]
¢þ
>WENV182461616
OINT01001229
[OINT] human gut metagenome; human gut
514
441
-
Lys
CTT
[ENA]
¢þ
>WENV182461615
OINT01001032
[OINT] human gut metagenome; human gut
522
610
+
Ser
GGA
[ENA]
¢þ
>WENV182461620
OINT01002156
[OINT] human gut metagenome; human gut
564
638
+
Cys
GCA
[ENA]
¢þ
>WENV182461610
OINT01000913
[OINT] human gut metagenome; human gut
637
712
+
Ala
GGC
[ENA]
¢þ
>WENV182461579
OINT01000247
[OINT] human gut metagenome; human gut
659
571
-
Ser
GGA
[ENA]
¢þ
>WENV182461582
OINT01000312
[OINT] human gut metagenome; human gut
682
610
-
Arg
CCG
[ENA]
¢þ
>WENV182461609
OINT01000888
[OINT] human gut metagenome; human gut
708
633
-
Val
GAC
[ENA]
¢þ
>WENV182461605
OINT01000848
[OINT] human gut metagenome; human gut
778
853
+
Ala
CGC
[ENA]
¢þ
>WENV182461611
OINT01000974
[OINT] human gut metagenome; human gut
788
702
-
Leu
CAG
[ENA]
¢þ
>WENV182461606
OINT01000882
[OINT] human gut metagenome; human gut
872
947
+
Gly
GCC
[ENA]
¢þ
>WENV182461612
OINT01000988
[OINT] human gut metagenome; human gut
897
821
-
Ile2
CAT
[ENA]
¢þ
>WENV182461607
OINT01000882
[OINT] human gut metagenome; human gut
977
1053
+
Asp
GTC
[ENA]
¢þ
>WENV182461608
OINT01000882
[OINT] human gut metagenome; human gut
1057
1132
+
Thr
GGT
[ENA]
¢þ
>WENV182461603
OINT01000743
[OINT] human gut metagenome; human gut
1189
1271
+
Leu
TAG
[ENA]
¢þ
>WENV182461604
OINT01000762
[OINT] human gut metagenome; human gut
1316
1400
+
Leu
CAA
[ENA]
¢þ
>WENV182461592
OINT01000465
[OINT] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182461591
OINT01000465
[OINT] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182461601
OINT01000474
[OINT] human gut metagenome; human gut
1691
1617
-
Thr
TGT
[ENA]
¢þ
>WENV182461600
OINT01000474
[OINT] human gut metagenome; human gut
1769
1696
-
His
GTG
[ENA]
¢þ
>WENV182461599
OINT01000474
[OINT] human gut metagenome; human gut
1846
1775
-
Arg
TCG
[ENA]
¢þ
>WENV182461598
OINT01000474
[OINT] human gut metagenome; human gut
1930
1859
-
Gln
TTG
[ENA]
¢þ
>WENV182461560
OINT01000032
[OINT] human gut metagenome; human gut
2035
2106
+
Gln
TTG
[ENA]
¢þ
>WENV182461597
OINT01000474
[OINT] human gut metagenome; human gut
2121
2048
-
Phe
GAA
[ENA]
¢þ
>WENV182461596
OINT01000474
[OINT] human gut metagenome; human gut
2201
2130
-
Gln
CTG
[ENA]
¢þ
>WENV182461595
OINT01000474
[OINT] human gut metagenome; human gut
2293
2207
-
Ser
TGA
[ENA]
¢þ
>WENV182461594
OINT01000474
[OINT] human gut metagenome; human gut
2375
2300
-
Arg
ACG
[ENA]
¢þ
>WENV182461593
OINT01000474
[OINT] human gut metagenome; human gut
2466
2381
-
Ser
GCT
[ENA]
¢þ
>WENV182461576
OINT01000161
[OINT] human gut metagenome; human gut
2649
2723
+
Thr
TGT
[ENA]
¢þ
>WENV182461583
OINT01000335
[OINT] human gut metagenome; human gut
2725
2650
-
Gly
CCC
[ENA]
¢þ
>WENV182461575
OINT01000159
[OINT] human gut metagenome; human gut
2883
2807
-
Val
TAC
[ENA]
¢þ
>WENV182461569
OINT01000109
[OINT] human gut metagenome; human gut
3203
3115
-
Ser
GGA
[ENA]
¢þ
>WENV182461578
OINT01000193
[OINT] human gut metagenome; human gut
3657
3730
+
Lys
CTT
[ENA]
¢þ
>WENV182461584
OINT01000338
[OINT] human gut metagenome; human gut
4161
4235
+
Asn
GTT
[ENA]
¢þ
>WENV182461585
OINT01000338
[OINT] human gut metagenome; human gut
4267
4338
+
Glu
TTC
[ENA]
¢þ
>WENV182461586
OINT01000338
[OINT] human gut metagenome; human gut
4373
4445
+
Thr
TGT
[ENA]
¢þ
>WENV182461587
OINT01000338
[OINT] human gut metagenome; human gut
4470
4545
+
fMet
CAT
[ENA]
¢þ
>WENV182461588
OINT01000338
[OINT] human gut metagenome; human gut
4564
4638
+
Phe
GAA
[ENA]
¢þ
>WENV182461589
OINT01000338
[OINT] human gut metagenome; human gut
4673
4745
+
Lys
TTT
[ENA]
¢þ
>WENV182461590
OINT01000338
[OINT] human gut metagenome; human gut
4798
4878
+
Leu
TAG
[ENA]
¢þ
>WENV182461581
OINT01000300
[OINT] human gut metagenome; human gut
4839
4765
-
Glu
CTC
[ENA]
¢þ
>WENV182461564
OINT01000053
[OINT] human gut metagenome; human gut
5018
4945
-
Trp
CCA
[ENA]
¢þ
>WENV182461570
OINT01000113
[OINT] human gut metagenome; human gut
5024
5098
+
Thr
TGT
[ENA]
¢þ
>WENV182461571
OINT01000113
[OINT] human gut metagenome; human gut
5141
5224
+
Tyr
GTA
[ENA]
¢þ
>WENV182461580
OINT01000300
[OINT] human gut metagenome; human gut
5281
5194
-
Ser
GCT
[ENA]
¢þ
>WENV182461572
OINT01000113
[OINT] human gut metagenome; human gut
5341
5413
+
Thr
GGT
[ENA]
¢þ
>WENV182461574
OINT01000116
[OINT] human gut metagenome; human gut
5580
5505
-
Pro
TGG
[ENA]
¢þ
>WENV182461573
OINT01000113
[OINT] human gut metagenome; human gut
6706
6779
+
Trp
CCA
[ENA]
¢þ
>WENV182461577
OINT01000186
[OINT] human gut metagenome; human gut
8163
8237
+
Arg
TCT
[ENA]
¢þ
>WENV182461566
OINT01000067
[OINT] human gut metagenome; human gut
8206
8131
-
Pro
GGG
[ENA]
¢þ
>WENV182461556
OINT01000009
[OINT] human gut metagenome; human gut
8844
8919
+
Lys
TTT
[ENA]
¢þ
>WENV182461568
OINT01000095
[OINT] human gut metagenome; human gut
10567
10640
+
Gly
GCC
[ENA]
¢þ
>WENV182461563
OINT01000052
[OINT] human gut metagenome; human gut
10688
10762
+
Ala
GGC
[ENA]
¢þ
>WENV182461562
OINT01000048
[OINT] human gut metagenome; human gut
15292
15220
-
Arg
CCT
[ENA]
¢þ
>WENV182461565
OINT01000059
[OINT] human gut metagenome; human gut
16516
16444
-
Glu
TTC
[ENA]
¢þ
>WENV182461558
OINT01000016
[OINT] human gut metagenome; human gut
18189
18115
-
Ile2
CAT
[ENA]
¢þ
>WENV182461561
OINT01000034
[OINT] human gut metagenome; human gut
18242
18327
+
Ser
TGA
[ENA]
¢þ
>WENV182461549
OINT01000002
[OINT] human gut metagenome; human gut
18679
18753
+
Asp
GTC
[ENA]
¢þ
>WENV182461559
OINT01000027
[OINT] human gut metagenome; human gut
19436
19509
+
fMet
CAT
[ENA]
¢þ
>WENV182461550
OINT01000002
[OINT] human gut metagenome; human gut
37194
37267
+
fMet
CAT
[ENA]
¢þ
>WENV182461551
OINT01000002
[OINT] human gut metagenome; human gut
37485
37558
+
Asn
GTT
[ENA]
¢þ
>WENV182461552
OINT01000002
[OINT] human gut metagenome; human gut
37565
37638
+
Trp
CCA
[ENA]
¢þ
>WENV182461548
OINT01000001
[OINT] human gut metagenome; human gut
37602
37527
-
Phe
GAA
[ENA]
¢þ
>WENV182461553
OINT01000002
[OINT] human gut metagenome; human gut
37643
37714
+
Gln
TTG
[ENA]
¢þ
>WENV182461554
OINT01000002
[OINT] human gut metagenome; human gut
37719
37791
+
Glu
TTC
[ENA]
¢þ
>WENV182461547
OINT01000001
[OINT] human gut metagenome; human gut
37783
37856
+
Pro
CGG
[ENA]
¢þ
>WENV182461555
OINT01000002
[OINT] human gut metagenome; human gut
37955
38037
+
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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