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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIOF] human gut metagenome; human gut
HIT:
119 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182463747
OIOF01003506
[OIOF] human gut metagenome; human gut
2
75
+
Phe
GAA
[ENA]
¢þ
>WENV182463761
OIOF01005217
[OIOF] human gut metagenome; human gut
25
100
+
Arg
TCT
[ENA]
¢þ
>WENV182463711
OIOF01001282
[OIOF] human gut metagenome; human gut
28
113
+
Tyr
GTA
[ENA]
¢þ
>WENV182463741
OIOF01003428
[OIOF] human gut metagenome; human gut
38
113
+
Arg
ACG
[ENA]
¢þ
>WENV182463752
OIOF01004527
[OIOF] human gut metagenome; human gut
45
119
+
Arg
CCG
[ENA]
¢þ
>WENV182463678
OIOF01000331
[OIOF] human gut metagenome; human gut
61
136
+
Ile
GAT
[ENA]
¢þ
>WENV182463717
OIOF01001545
[OIOF] human gut metagenome; human gut
66
138
+
Thr
GGT
[ENA]
¢þ
>WENV182463742
OIOF01003428
[OIOF] human gut metagenome; human gut
120
206
+
Ser
TGA
[ENA]
¢þ
>WENV182463686
OIOF01000427
[OIOF] human gut metagenome; human gut
140
56
-
Leu
CAA
[ENA]
¢þ
>WENV182463679
OIOF01000331
[OIOF] human gut metagenome; human gut
143
216
+
Ala
TGC
[ENA]
¢þ
>WENV182463673
OIOF01000232
[OIOF] human gut metagenome; human gut
155
71
-
Leu
GAG
[ENA]
¢þ
>WENV182463714
OIOF01001393
[OIOF] human gut metagenome; human gut
162
87
-
Thr
TGT
[ENA]
¢þ
>WENV182463677
OIOF01000318
[OIOF] human gut metagenome; human gut
165
92
-
Thr
CGT
[ENA]
¢þ
>WENV182463762
OIOF01005217
[OIOF] human gut metagenome; human gut
170
245
+
His
GTG
[ENA]
¢þ
>WENV182463734
OIOF01002420
[OIOF] human gut metagenome; human gut
171
95
-
Arg
ACG
[ENA]
¢þ
>WENV182463694
OIOF01000705
[OIOF] human gut metagenome; human gut
176
250
+
Ile
GAT
[ENA]
¢þ
>WENV182463700
OIOF01000732
[OIOF] human gut metagenome; human gut
182
256
+
Ile
GAT
[ENA]
¢þ
>WENV182463743
OIOF01003428
[OIOF] human gut metagenome; human gut
212
283
+
Gln
CTG
[ENA]
¢þ
>WENV182463712
OIOF01001282
[OIOF] human gut metagenome; human gut
214
288
+
Thr
GGT
[ENA]
¢þ
>WENV182463735
OIOF01002437
[OIOF] human gut metagenome; human gut
231
157
-
Val
CAC
[ENA]
¢þ
>WENV182463757
OIOF01004805
[OIOF] human gut metagenome; human gut
231
158
-
Lys
TTT
[ENA]
¢þ
>WENV182463758
OIOF01004947
[OIOF] human gut metagenome; human gut
231
307
+
Met
CAT
[ENA]
¢þ
>WENV182463772
OIOF01007066
[OIOF] human gut metagenome; human gut
246
173
-
Gly
CCC
[ENA]
¢þ
>WENV182463775
OIOF01007860
[OIOF] human gut metagenome; human gut
257
181
-
Arg
TCT
[ENA]
¢þ
>WENV182463672
OIOF01000232
[OIOF] human gut metagenome; human gut
259
178
-
Leu
CAG
[ENA]
¢þ
>WENV182463756
OIOF01004796
[OIOF] human gut metagenome; human gut
259
184
-
Ala
CGC
[ENA]
¢þ
>WENV182463701
OIOF01000732
[OIOF] human gut metagenome; human gut
273
347
+
Ala
TGC
[ENA]
¢þ
>WENV182463687
OIOF01000431
[OIOF] human gut metagenome; human gut
275
201
-
Arg
TCT
[ENA]
¢þ
>WENV182463715
OIOF01001464
[OIOF] human gut metagenome; human gut
284
197
-
Ser
TGA
[ENA]
¢þ
>WENV182463763
OIOF01005217
[OIOF] human gut metagenome; human gut
298
369
+
Gln
TTG
[ENA]
¢þ
>WENV182463751
OIOF01004372
[OIOF] human gut metagenome; human gut
313
241
-
Arg
CCT
[ENA]
¢þ
>WENV182463723
OIOF01001795
[OIOF] human gut metagenome; human gut
324
399
+
His
GTG
[ENA]
¢þ
>WENV182463771
OIOF01006748
[OIOF] human gut metagenome; human gut
326
245
-
Tyr
GTA
[ENA]
¢þ
>WENV182463680
OIOF01000337
[OIOF] human gut metagenome; human gut
329
258
-
Gln
TTG
[ENA]
¢þ
>WENV182463736
OIOF01002543
[OIOF] human gut metagenome; human gut
330
416
+
Leu
CAG
[ENA]
¢þ
>WENV182463721
OIOF01001675
[OIOF] human gut metagenome; human gut
331
406
+
His
GTG
[ENA]
¢þ
>WENV182463774
OIOF01007860
[OIOF] human gut metagenome; human gut
336
261
-
Pro
TGG
[ENA]
¢þ
>WENV182463732
OIOF01002243
[OIOF] human gut metagenome; human gut
339
414
+
Pro
TGG
[ENA]
¢þ
>WENV182463706
OIOF01001247
[OIOF] human gut metagenome; human gut
341
259
-
Leu
CAA
[ENA]
¢þ
>WENV182463695
OIOF01000705
[OIOF] human gut metagenome; human gut
341
415
+
Ala
TGC
[ENA]
¢þ
>WENV182463766
OIOF01005576
[OIOF] human gut metagenome; human gut
370
444
+
Pro
CGG
[ENA]
¢þ
>WENV182463718
OIOF01001556
[OIOF] human gut metagenome; human gut
375
300
-
Arg
CCT
[ENA]
¢þ
>WENV182463671
OIOF01000232
[OIOF] human gut metagenome; human gut
379
306
-
Gly
GCC
[ENA]
¢þ
>WENV182463755
OIOF01004782
[OIOF] human gut metagenome; human gut
386
316
-
Gly
TCC
[ENA]
¢þ
>WENV182463769
OIOF01005724
[OIOF] human gut metagenome; human gut
405
330
-
Thr
GGT
[ENA]
¢þ
>WENV182463764
OIOF01005217
[OIOF] human gut metagenome; human gut
406
479
+
Lys
TTT
[ENA]
¢þ
>WENV182463759
OIOF01005105
[OIOF] human gut metagenome; human gut
410
486
+
Pro
TGG
[ENA]
¢þ
>WENV182463738
OIOF01003145
[OIOF] human gut metagenome; human gut
434
516
+
Leu
TAG
[ENA]
¢þ
>WENV182463724
OIOF01001795
[OIOF] human gut metagenome; human gut
438
511
+
Gln
TTG
[ENA]
¢þ
>WENV182463754
OIOF01004782
[OIOF] human gut metagenome; human gut
468
394
-
Pro
TGG
[ENA]
¢þ
>WENV182463749
OIOF01004134
[OIOF] human gut metagenome; human gut
474
383
-
Ser
CGA
[ENA]
¢þ
>WENV182463744
OIOF01003428
[OIOF] human gut metagenome; human gut
483
554
+
Gln
TTG
[ENA]
¢þ
>WENV182463768
OIOF01005724
[OIOF] human gut metagenome; human gut
485
409
-
Asp
GTC
[ENA]
¢þ
>WENV182463773
OIOF01007421
[OIOF] human gut metagenome; human gut
519
444
-
Val
TAC
[ENA]
¢þ
>WENV182463765
OIOF01005308
[OIOF] human gut metagenome; human gut
520
595
+
Thr
CGT
[ENA]
¢þ
>WENV182463720
OIOF01001662
[OIOF] human gut metagenome; human gut
526
601
+
Phe
GAA
[ENA]
¢þ
>WENV182463727
OIOF01002090
[OIOF] human gut metagenome; human gut
533
449
-
Tyr
GTA
[ENA]
¢þ
>WENV182463716
OIOF01001471
[OIOF] human gut metagenome; human gut
546
473
-
Lys
CTT
[ENA]
¢þ
>WENV182463770
OIOF01006059
[OIOF] human gut metagenome; human gut
558
473
-
Leu
CAA
[ENA]
¢þ
>WENV182463705
OIOF01001125
[OIOF] human gut metagenome; human gut
577
650
+
Gly
CCC
[ENA]
¢þ
>WENV182463739
OIOF01003272
[OIOF] human gut metagenome; human gut
580
665
+
Ser
TGA
[ENA]
¢þ
>WENV182463767
OIOF01005724
[OIOF] human gut metagenome; human gut
590
515
-
Gly
GCC
[ENA]
¢þ
>WENV182463710
OIOF01001278
[OIOF] human gut metagenome; human gut
603
528
-
Val
TAC
[ENA]
¢þ
>WENV182463760
OIOF01005105
[OIOF] human gut metagenome; human gut
607
681
+
Met
CAT
[ENA]
¢þ
>WENV182463726
OIOF01002090
[OIOF] human gut metagenome; human gut
638
563
-
Thr
TGT
[ENA]
¢þ
>WENV182463748
OIOF01003628
[OIOF] human gut metagenome; human gut
650
725
+
Pro
GGG
[ENA]
¢þ
>WENV182463753
OIOF01004782
[OIOF] human gut metagenome; human gut
652
560
-
Ser
GCT
[ENA]
¢þ
>WENV182463668
OIOF01000194
[OIOF] human gut metagenome; human gut
674
600
-
Met
CAT
[ENA]
¢þ
>WENV182463709
OIOF01001278
[OIOF] human gut metagenome; human gut
679
605
-
Glu
TTC
[ENA]
¢þ
>WENV182463745
OIOF01003428
[OIOF] human gut metagenome; human gut
714
787
+
His
GTG
[ENA]
¢þ
>WENV182463676
OIOF01000315
[OIOF] human gut metagenome; human gut
741
667
-
Ala
GGC
[ENA]
¢þ
>WENV182463708
OIOF01001278
[OIOF] human gut metagenome; human gut
757
682
-
Asn
GTT
[ENA]
¢þ
>WENV182463740
OIOF01003364
[OIOF] human gut metagenome; human gut
774
849
+
Lys
TTT
[ENA]
¢þ
>WENV182463750
OIOF01004334
[OIOF] human gut metagenome; human gut
786
711
-
Lys
TTT
[ENA]
¢þ
>WENV182463746
OIOF01003428
[OIOF] human gut metagenome; human gut
792
866
+
Thr
TGT
[ENA]
¢þ
>WENV182463733
OIOF01002244
[OIOF] human gut metagenome; human gut
798
721
-
Gln
TTG
[ENA]
¢þ
>WENV182463725
OIOF01002090
[OIOF] human gut metagenome; human gut
825
750
-
Asp
GTC
[ENA]
¢þ
>WENV182463699
OIOF01000726
[OIOF] human gut metagenome; human gut
828
752
-
His
GTG
[ENA]
¢þ
>WENV182463675
OIOF01000300
[OIOF] human gut metagenome; human gut
839
766
-
Phe
GAA
[ENA]
¢þ
>WENV182463728
OIOF01002116
[OIOF] human gut metagenome; human gut
855
931
+
Pro
TGG
[ENA]
¢þ
>WENV182463707
OIOF01001278
[OIOF] human gut metagenome; human gut
868
793
-
Gly
GCC
[ENA]
¢þ
>WENV182463729
OIOF01002116
[OIOF] human gut metagenome; human gut
939
1014
+
Gly
TCC
[ENA]
¢þ
>WENV182463682
OIOF01000383
[OIOF] human gut metagenome; human gut
1020
1094
+
Thr
TGT
[ENA]
¢þ
>WENV182463730
OIOF01002116
[OIOF] human gut metagenome; human gut
1023
1098
+
Lys
CTT
[ENA]
¢þ
>WENV182463737
OIOF01002587
[OIOF] human gut metagenome; human gut
1035
960
-
Glu
CTC
[ENA]
¢þ
>WENV182463731
OIOF01002116
[OIOF] human gut metagenome; human gut
1106
1180
+
Glu
TTC
[ENA]
¢þ
>WENV182463664
OIOF01000093
[OIOF] human gut metagenome; human gut
1112
1039
-
fMet
CAT
[ENA]
¢þ
>WENV182463685
OIOF01000425
[OIOF] human gut metagenome; human gut
1128
1202
+
Asp
GTC
[ENA]
¢þ
>WENV182463722
OIOF01001716
[OIOF] human gut metagenome; human gut
1155
1239
+
Leu
CAA
[ENA]
¢þ
>WENV182463691
OIOF01000641
[OIOF] human gut metagenome; human gut
1188
1262
+
Gly
TCC
[ENA]
¢þ
>WENV182463719
OIOF01001617
[OIOF] human gut metagenome; human gut
1261
1187
-
Glu
CTC
[ENA]
¢þ
>WENV182463689
OIOF01000548
[OIOF] human gut metagenome; human gut
1392
1319
-
Trp
CCA
[ENA]
¢þ
>WENV182463693
OIOF01000641
[OIOF] human gut metagenome; human gut
1545
1454
-
Ser
GCT
[ENA]
¢þ
>WENV182463713
OIOF01001282
[OIOF] human gut metagenome; human gut
1610
1685
+
Trp
CCA
[ENA]
¢þ
>WENV182463703
OIOF01000876
[OIOF] human gut metagenome; human gut
1663
1588
-
His
GTG
[ENA]
¢þ
>WENV182463692
OIOF01000641
[OIOF] human gut metagenome; human gut
1693
1608
-
Ser
TGA
[ENA]
¢þ
>WENV182463704
OIOF01001060
[OIOF] human gut metagenome; human gut
1875
1802
-
Lys
CTT
[ENA]
¢þ
>WENV182463688
OIOF01000442
[OIOF] human gut metagenome; human gut
2008
1936
-
fMet
CAT
[ENA]
¢þ
>WENV182463663
OIOF01000069
[OIOF] human gut metagenome; human gut
2014
1938
-
Val
TAC
[ENA]
¢þ
>WENV182463690
OIOF01000586
[OIOF] human gut metagenome; human gut
2070
1998
-
Glu
TTC
[ENA]
¢þ
>WENV182463674
OIOF01000255
[OIOF] human gut metagenome; human gut
2102
2028
-
Ile2
CAT
[ENA]
¢þ
>WENV182463698
OIOF01000724
[OIOF] human gut metagenome; human gut
2198
2122
-
Met
CAT
[ENA]
¢þ
>WENV182463684
OIOF01000413
[OIOF] human gut metagenome; human gut
2259
2184
-
Ala
TGC
[ENA]
¢þ
>WENV182463697
OIOF01000724
[OIOF] human gut metagenome; human gut
2275
2200
-
Thr
GGT
[ENA]
¢þ
>WENV182463702
OIOF01000755
[OIOF] human gut metagenome; human gut
2285
2197
-
Ser
GGA
[ENA]
¢þ
>WENV182463696
OIOF01000724
[OIOF] human gut metagenome; human gut
2380
2304
-
fMet
CAT
[ENA]
¢þ
>WENV182463683
OIOF01000413
[OIOF] human gut metagenome; human gut
2389
2313
-
Ile
GAT
[ENA]
¢þ
>WENV182463681
OIOF01000371
[OIOF] human gut metagenome; human gut
3524
3451
-
Pro
CGG
[ENA]
¢þ
>WENV182463669
OIOF01000198
[OIOF] human gut metagenome; human gut
3634
3708
+
Thr
TGT
[ENA]
¢þ
>WENV182463670
OIOF01000198
[OIOF] human gut metagenome; human gut
3751
3834
+
Tyr
GTA
[ENA]
¢þ
>WENV182463666
OIOF01000110
[OIOF] human gut metagenome; human gut
4235
4309
+
Asn
GTT
[ENA]
¢þ
>WENV182463662
OIOF01000068
[OIOF] human gut metagenome; human gut
4260
4188
-
Arg
CCG
[ENA]
¢þ
>WENV182463661
OIOF01000056
[OIOF] human gut metagenome; human gut
5010
4928
-
Leu
TAG
[ENA]
¢þ
>WENV182463665
OIOF01000106
[OIOF] human gut metagenome; human gut
5569
5641
+
Glu
TTC
[ENA]
¢þ
>WENV182463667
OIOF01000147
[OIOF] human gut metagenome; human gut
5711
5635
-
fMet
CAT
[ENA]
¢þ
>WENV182463660
OIOF01000035
[OIOF] human gut metagenome; human gut
6508
6435
-
Trp
CCA
[ENA]
¢þ
>WENV182463659
OIOF01000034
[OIOF] human gut metagenome; human gut
9880
9951
+
Gln
CTG
[ENA]
¢þ
>WENV182463658
OIOF01000030
[OIOF] human gut metagenome; human gut
10009
10080
+
Gln
TTG
[ENA]
¢þ
>WENV182463657
OIOF01000026
[OIOF] human gut metagenome; human gut
10427
10355
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK